Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.35■□□□□ 0.85
PTX4Q96A99 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.35■□□□□ 0.85
PTX4Q96A99 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.35■□□□□ 0.85
PTX4Q96A99 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PTX4Q96A99 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.35■□□□□ 0.85
PTX4Q96A99 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
PTX4Q96A99 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTX4Q96A99 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.34■□□□□ 0.85
PTX4Q96A99 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.34■□□□□ 0.85
PTX4Q96A99 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
PTX4Q96A99 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTX4Q96A99 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PTX4Q96A99 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTX4Q96A99 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTX4Q96A99 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
PTX4Q96A99 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
PTX4Q96A99 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.33■□□□□ 0.84
PTX4Q96A99 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTX4Q96A99 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTX4Q96A99 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTX4Q96A99 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTX4Q96A99 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PTX4Q96A99 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
PTX4Q96A99 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTX4Q96A99 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.33■□□□□ 0.84
PTX4Q96A99 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTX4Q96A99 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.32■□□□□ 0.84
PTX4Q96A99 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTX4Q96A99 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.32■□□□□ 0.84
PTX4Q96A99 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTX4Q96A99 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTX4Q96A99 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.32■□□□□ 0.84
PTX4Q96A99 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.32■□□□□ 0.84
PTX4Q96A99 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.32■□□□□ 0.84
PTX4Q96A99 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTX4Q96A99 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTX4Q96A99 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTX4Q96A99 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTX4Q96A99 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTX4Q96A99 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.31■□□□□ 0.84
PTX4Q96A99 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.31■□□□□ 0.84
PTX4Q96A99 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.3■□□□□ 0.84
PTX4Q96A99 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTX4Q96A99 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTX4Q96A99 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTX4Q96A99 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.3■□□□□ 0.84
PTX4Q96A99 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC20.29■□□□□ 0.84
PTX4Q96A99 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
PTX4Q96A99 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PTX4Q96A99 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PTX4Q96A99 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.29■□□□□ 0.84
PTX4Q96A99 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
PTX4Q96A99 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTX4Q96A99 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.28■□□□□ 0.84
PTX4Q96A99 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTX4Q96A99 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PTX4Q96A99 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTX4Q96A99 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTX4Q96A99 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
PTX4Q96A99 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.28■□□□□ 0.84
PTX4Q96A99 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.28■□□□□ 0.84
PTX4Q96A99 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
PTX4Q96A99 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTX4Q96A99 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTX4Q96A99 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTX4Q96A99 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PTX4Q96A99 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTX4Q96A99 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTX4Q96A99 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTX4Q96A99 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms