Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL5A3P25940 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL5A3P25940 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL5A3P25940 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.8■■■□□ 2.52
COL5A3P25940 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL5A3P25940 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
COL5A3P25940 BX255925.1-201ENST00000566954 1854 ntBASIC30.79■■■□□ 2.52
COL5A3P25940 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
COL5A3P25940 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL5A3P25940 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL5A3P25940 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.78■■■□□ 2.52
COL5A3P25940 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.78■■■□□ 2.52
COL5A3P25940 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL5A3P25940 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
COL5A3P25940 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.78■■■□□ 2.52
COL5A3P25940 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
COL5A3P25940 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
COL5A3P25940 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.77■■■□□ 2.52
COL5A3P25940 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL5A3P25940 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL5A3P25940 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
COL5A3P25940 AC011551.1-201ENST00000614101 683 ntBASIC30.76■■■□□ 2.52
COL5A3P25940 AC110285.6-201ENST00000617652 491 ntBASIC30.76■■■□□ 2.52
COL5A3P25940 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.76■■■□□ 2.51
COL5A3P25940 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL5A3P25940 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.76■■■□□ 2.51
COL5A3P25940 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.51
COL5A3P25940 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL5A3P25940 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.75■■■□□ 2.51
COL5A3P25940 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
COL5A3P25940 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL5A3P25940 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL5A3P25940 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
COL5A3P25940 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.74■■■□□ 2.51
COL5A3P25940 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.74■■■□□ 2.51
COL5A3P25940 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.74■■■□□ 2.51
COL5A3P25940 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL5A3P25940 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL5A3P25940 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL5A3P25940 AL512631.2-201ENST00000604634 923 ntBASIC30.73■■■□□ 2.51
COL5A3P25940 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.73■■■□□ 2.51
COL5A3P25940 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC30.72■■■□□ 2.51
COL5A3P25940 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL5A3P25940 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL5A3P25940 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC30.72■■■□□ 2.51
COL5A3P25940 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.72■■■□□ 2.51
COL5A3P25940 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.72■■■□□ 2.51
COL5A3P25940 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.72■■■□□ 2.51
COL5A3P25940 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
COL5A3P25940 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL5A3P25940 ST7-202ENST00000323984 2142 ntTSL 5 BASIC30.71■■■□□ 2.51
COL5A3P25940 ST7-205ENST00000393446 2114 ntTSL 5 BASIC30.71■■■□□ 2.51
COL5A3P25940 ST7-207ENST00000393449 2127 ntTSL 5 BASIC30.71■■■□□ 2.51
COL5A3P25940 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.71■■■□□ 2.51
COL5A3P25940 AL139246.5-201ENST00000606645 996 ntBASIC30.71■■■□□ 2.51
COL5A3P25940 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL5A3P25940 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL5A3P25940 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL5A3P25940 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL5A3P25940 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
COL5A3P25940 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.7■■■□□ 2.51
COL5A3P25940 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.7■■■□□ 2.51
COL5A3P25940 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL5A3P25940 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.7■■■□□ 2.51
COL5A3P25940 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.7■■■□□ 2.5
COL5A3P25940 AL136116.3-201ENST00000402907 1138 ntBASIC30.7■■■□□ 2.5
COL5A3P25940 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.7■■■□□ 2.5
COL5A3P25940 MIR4466-201ENST00000606121 54 ntBASIC30.69■■■□□ 2.5
COL5A3P25940 MIR6724-1-201ENST00000616420 92 ntBASIC30.69■■■□□ 2.5
COL5A3P25940 MIR6724-2-201ENST00000616483 92 ntBASIC30.69■■■□□ 2.5
COL5A3P25940 MIR6724-4-201ENST00000617390 92 ntBASIC30.69■■■□□ 2.5
COL5A3P25940 MIR6724-3-201ENST00000622482 92 ntBASIC30.69■■■□□ 2.5
COL5A3P25940 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL5A3P25940 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL5A3P25940 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.68■■■□□ 2.5
COL5A3P25940 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL5A3P25940 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.67■■■□□ 2.5
COL5A3P25940 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL5A3P25940 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL5A3P25940 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL5A3P25940 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC30.66■■■□□ 2.5
COL5A3P25940 MTDHP2-201ENST00000601468 714 ntBASIC30.66■■■□□ 2.5
COL5A3P25940 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL5A3P25940 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
COL5A3P25940 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL5A3P25940 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
COL5A3P25940 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.65■■■□□ 2.5
COL5A3P25940 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.65■■■□□ 2.5
COL5A3P25940 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
COL5A3P25940 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL5A3P25940 MIR3621-201ENST00000580529 85 ntBASIC30.64■■■□□ 2.5
COL5A3P25940 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
COL5A3P25940 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.64■■■□□ 2.5
COL5A3P25940 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.64■■■□□ 2.5
COL5A3P25940 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
COL5A3P25940 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.64■■■□□ 2.5
COL5A3P25940 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.63■■■□□ 2.49
COL5A3P25940 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL5A3P25940 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL5A3P25940 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms