Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
ATF4P18848 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
ATF4P18848 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.68■□□□□ 0.74
ATF4P18848 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
ATF4P18848 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
ATF4P18848 DUSP8P4-201ENST00000399538 1761 ntBASIC19.67■□□□□ 0.74
ATF4P18848 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
ATF4P18848 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.67■□□□□ 0.74
ATF4P18848 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.67■□□□□ 0.74
ATF4P18848 CHML-205ENST00000638160 705 ntTSL 3 BASIC19.67■□□□□ 0.74
ATF4P18848 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.67■□□□□ 0.74
ATF4P18848 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
ATF4P18848 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
ATF4P18848 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.67■□□□□ 0.74
ATF4P18848 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.66■□□□□ 0.74
ATF4P18848 LINC01003-201ENST00000564834 1764 ntBASIC19.66■□□□□ 0.74
ATF4P18848 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATF4P18848 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATF4P18848 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.66■□□□□ 0.74
ATF4P18848 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
ATF4P18848 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
ATF4P18848 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
ATF4P18848 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.65■□□□□ 0.74
ATF4P18848 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
ATF4P18848 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ATF4P18848 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
ATF4P18848 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATF4P18848 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.65■□□□□ 0.74
ATF4P18848 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.65■□□□□ 0.74
ATF4P18848 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATF4P18848 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATF4P18848 AC127502.1-201ENST00000399971 1502 ntBASIC19.65■□□□□ 0.74
ATF4P18848 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
ATF4P18848 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATF4P18848 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ATF4P18848 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATF4P18848 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.64■□□□□ 0.73
ATF4P18848 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
ATF4P18848 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATF4P18848 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
ATF4P18848 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
ATF4P18848 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATF4P18848 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATF4P18848 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC19.63■□□□□ 0.73
ATF4P18848 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ATF4P18848 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.63■□□□□ 0.73
ATF4P18848 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
ATF4P18848 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.62■□□□□ 0.73
ATF4P18848 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
ATF4P18848 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATF4P18848 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
ATF4P18848 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
ATF4P18848 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
ATF4P18848 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.62■□□□□ 0.73
ATF4P18848 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
ATF4P18848 C1orf229-201ENST00000623686 2258 ntBASIC19.62■□□□□ 0.73
ATF4P18848 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
ATF4P18848 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATF4P18848 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATF4P18848 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATF4P18848 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
ATF4P18848 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ATF4P18848 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
ATF4P18848 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.61■□□□□ 0.73
ATF4P18848 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATF4P18848 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
ATF4P18848 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATF4P18848 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
ATF4P18848 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
ATF4P18848 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ATF4P18848 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 AC092803.2-201ENST00000564287 1899 ntBASIC19.59■□□□□ 0.73
ATF4P18848 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.59■□□□□ 0.73
ATF4P18848 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.59■□□□□ 0.73
ATF4P18848 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.59■□□□□ 0.73
ATF4P18848 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.59■□□□□ 0.73
ATF4P18848 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ATF4P18848 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
ATF4P18848 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
ATF4P18848 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms