RNA–Protein interactions for RNA: ENST00000243056.4

HOXC13-201, Transcript of homeobox C13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC13, Length 2,423 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC13-201ENST00000243056 NISCHQ9Y2I1 1504 aa42.45■■■■■ 4.39
HOXC13-201ENST00000243056 CCDC180Q9P1Z9 1646 aa36.79■■■■□ 3.48
HOXC13-201ENST00000243056 DCAF8L2P0C7V8 631 aa35.74■■■■□ 3.31
HOXC13-201ENST00000243056 ZCCHC6Q5VYS8 1495 aaKnown RBP35.58■■■■□ 3.29
HOXC13-201ENST00000243056 ABCC9O60706 1549 aa35.56■■■■□ 3.28
HOXC13-201ENST00000243056 SHROOM4Q9ULL8 1493 aa35.1■■■■□ 3.21
HOXC13-201ENST00000243056 DCAF1Q9Y4B6 1507 aa34.81■■■■□ 3.16
HOXC13-201ENST00000243056 NACADO15069 1562 aa34.42■■■■□ 3.1
HOXC13-201ENST00000243056 MYO15BQ96JP2 1530 aa34.39■■■■□ 3.1
HOXC13-201ENST00000243056 SCRIBQ14160 1630 aa34.28■■■■□ 3.08
HOXC13-201ENST00000243056 RB1CC1Q8TDY2 1594 aa34.22■■■■□ 3.07
HOXC13-201ENST00000243056 PABPN1Q86U42 306 aaKnown RBP eCLIP33.7■■■□□ 2.98
HOXC13-201ENST00000243056 SUPT5HO00267 1087 aaKnown RBP33.65■■■□□ 2.98
HOXC13-201ENST00000243056 UNC13AQ9UPW8 1703 aa33.64■■■□□ 2.98
HOXC13-201ENST00000243056 PELP1Q8IZL8 1130 aaKnown RBP33.58■■■□□ 2.97
HOXC13-201ENST00000243056 HRCP23327 699 aa33.57■■■□□ 2.96
HOXC13-201ENST00000243056 BICRAQ9NZM4 1560 aa33.36■■■□□ 2.93
HOXC13-201ENST00000243056 CECR2Q9BXF3 1484 aa33.27■■■□□ 2.92
HOXC13-201ENST00000243056 RSF1Q96T23 1441 aaPredicted RBP33■■■□□ 2.87
HOXC13-201ENST00000243056 MROH2BQ7Z745 1585 aa32.96■■■□□ 2.87
HOXC13-201ENST00000243056 PPARGC1BQ86YN6 1023 aaKnown RBP32.89■■■□□ 2.86
HOXC13-201ENST00000243056 BAZ1AQ9NRL2 1556 aaPredicted RBP32.71■■■□□ 2.83
HOXC13-201ENST00000243056 WIZO95785 1651 aa32.67■■■□□ 2.82
HOXC13-201ENST00000243056 SMARCA4P51532 1647 aa32.65■■■□□ 2.82
HOXC13-201ENST00000243056 MYT1Q01538 1121 aa32.49■■■□□ 2.79
HOXC13-201ENST00000243056 PCGF6Q9BYE7 350 aa32.39■■■□□ 2.78
HOXC13-201ENST00000243056 EIF4G1Q04637 1599 aaKnown RBP32.36■■■□□ 2.77
HOXC13-201ENST00000243056 SCAF1Q9H7N4 1312 aaKnown RBP32.3■■■□□ 2.76
HOXC13-201ENST00000243056 ATAD2BQ9ULI0 1458 aa32.24■■■□□ 2.75
HOXC13-201ENST00000243056 TOP2AP11388 1531 aaKnown RBP32.11■■■□□ 2.73
HOXC13-201ENST00000243056 PEG3Q9GZU2 1588 aa32.09■■■□□ 2.73
HOXC13-201ENST00000243056 BAZ1BQ9UIG0 1483 aaKnown RBP32.04■■■□□ 2.72
HOXC13-201ENST00000243056 SMARCA2P51531 1590 aa32.03■■■□□ 2.72
HOXC13-201ENST00000243056 CCDC88BA6NC98 1476 aa31.98■■■□□ 2.71
HOXC13-201ENST00000243056 CC2D2AQ9P2K1 1620 aa31.97■■■□□ 2.71
HOXC13-201ENST00000243056 CHIC1Q5VXU3 224 aa31.91■■■□□ 2.7
HOXC13-201ENST00000243056 NCAPD3P42695 1498 aa31.88■■■□□ 2.69
HOXC13-201ENST00000243056 DNAJC5BQ9UF47 199 aa31.78■■■□□ 2.68
HOXC13-201ENST00000243056 HMGXB3Q12766 1538 aa31.71■■■□□ 2.67
HOXC13-201ENST00000243056 TRIM41Q8WV44 630 aa31.43■■■□□ 2.62
HOXC13-201ENST00000243056 ABCC8Q09428 1581 aa31.39■■■□□ 2.61
HOXC13-201ENST00000243056 NESP48681 1621 aa31.19■■■□□ 2.58
HOXC13-201ENST00000243056 CFTRP13569 1480 aa31.17■■■□□ 2.58
HOXC13-201ENST00000243056 FAM9AQ8IZU1 332 aaPredicted RBP31.17■■■□□ 2.58
HOXC13-201ENST00000243056 ACIN1Q9UKV3 1341 aaKnown RBP31.17■■■□□ 2.58
HOXC13-201ENST00000243056 CADPSQ9ULU8 1353 aa31.16■■■□□ 2.58
HOXC13-201ENST00000243056 TRIM26Q12899 539 aaPredicted RBP31.09■■■□□ 2.57
HOXC13-201ENST00000243056 ZEB1P37275 1124 aaPredicted RBP31.07■■■□□ 2.56
HOXC13-201ENST00000243056 NEUROD1Q13562 356 aa31.07■■■□□ 2.56
HOXC13-201ENST00000243056 WRNQ14191 1432 aaPredicted RBP eCLIP31.03■■■□□ 2.56
HOXC13-201ENST00000243056 EHMT2Q96KQ7 1210 aa30.99■■■□□ 2.55
HOXC13-201ENST00000243056 LOC105371045A0A1W2PR82 267 aa30.96■■■□□ 2.55
HOXC13-201ENST00000243056 GTF3C3Q9Y5Q9 886 aa30.95■■■□□ 2.54
HOXC13-201ENST00000243056 SYNJ1O43426 1573 aa30.94■■■□□ 2.54
HOXC13-201ENST00000243056 FANCD2Q9BXW9 1451 aa30.85■■■□□ 2.53
HOXC13-201ENST00000243056 SOGA1O94964 1423 aa30.78■■■□□ 2.52
HOXC13-201ENST00000243056 CUX1P39880 1505 aa30.78■■■□□ 2.52
HOXC13-201ENST00000243056 TTBK1Q5TCY1 1321 aaPredicted RBP30.76■■■□□ 2.51
HOXC13-201ENST00000243056 LAMC3Q9Y6N6 1575 aa30.75■■■□□ 2.51
HOXC13-201ENST00000243056 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
HOXC13-201ENST00000243056 PRDM2Q13029 1718 aa30.74■■■□□ 2.51
HOXC13-201ENST00000243056 TOP2BQ02880 1626 aa30.66■■■□□ 2.5
HOXC13-201ENST00000243056 PDS5BQ9NTI5 1447 aa30.62■■■□□ 2.49
HOXC13-201ENST00000243056 CEP164Q9UPV0 1460 aa30.6■■■□□ 2.49
HOXC13-201ENST00000243056 KIF21AQ7Z4S6 1674 aa30.58■■■□□ 2.49
HOXC13-201ENST00000243056 BIVM-ERCC5R4GMW8 1640 aa30.56■■■□□ 2.48
HOXC13-201ENST00000243056 CENPBP07199 599 aaPredicted RBP30.53■■■□□ 2.48
HOXC13-201ENST00000243056 URB2Q14146 1524 aaKnown RBP30.51■■■□□ 2.47
HOXC13-201ENST00000243056 FGD5Q6ZNL6 1462 aa30.48■■■□□ 2.47
HOXC13-201ENST00000243056 BCL11AQ9H165 835 aa30.47■■■□□ 2.47
HOXC13-201ENST00000243056 TOPBP1Q92547 1522 aa30.47■■■□□ 2.47
HOXC13-201ENST00000243056 CSRNP3Q8WYN3 585 aa30.44■■■□□ 2.46
HOXC13-201ENST00000243056 RAD54L2Q9Y4B4 1467 aa30.41■■■□□ 2.46
HOXC13-201ENST00000243056 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.45
HOXC13-201ENST00000243056 ERCC6Q03468 1493 aa30.38■■■□□ 2.45
HOXC13-201ENST00000243056 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
HOXC13-201ENST00000243056 CUX2O14529 1486 aa30.29■■■□□ 2.44
HOXC13-201ENST00000243056 MRC2Q9UBG0 1479 aa30.24■■■□□ 2.43
HOXC13-201ENST00000243056 EEA1Q15075 1411 aa30.22■■■□□ 2.43
HOXC13-201ENST00000243056 KIF27Q86VH2 1401 aa30.2■■■□□ 2.42
HOXC13-201ENST00000243056 UBTFP17480 764 aaKnown RBP30.18■■■□□ 2.42
HOXC13-201ENST00000243056 TDRD9Q8NDG6 1382 aaKnown RBP30.18■■■□□ 2.42
HOXC13-201ENST00000243056 DIEXFQ68CQ4 756 aaKnown RBP30.11■■■□□ 2.41
HOXC13-201ENST00000243056 RANGAP1P46060 587 aaPredicted RBP30.1■■■□□ 2.41
HOXC13-201ENST00000243056 RAPGEF2Q9Y4G8 1499 aa30.09■■■□□ 2.41
HOXC13-201ENST00000243056 IGF1RP08069 1367 aa30.08■■■□□ 2.41
HOXC13-201ENST00000243056 ABCA10Q8WWZ4 1543 aa30.06■■■□□ 2.4
HOXC13-201ENST00000243056 WDR62O43379 1518 aa30.04■■■□□ 2.4
HOXC13-201ENST00000243056 THOC2Q8NI27 1593 aaKnown RBP30.03■■■□□ 2.4
HOXC13-201ENST00000243056 AQRO60306 1485 aaKnown RBP eCLIP29.98■■■□□ 2.39
HOXC13-201ENST00000243056 GOLGA3Q08378 1498 aa29.98■■■□□ 2.39
HOXC13-201ENST00000243056 TARBP1Q13395 1621 aaKnown RBP29.96■■■□□ 2.39
HOXC13-201ENST00000243056 ZNF608Q9ULD9 1512 aaPredicted RBP29.95■■■□□ 2.39
HOXC13-201ENST00000243056 PRXQ9BXM0 1461 aa29.95■■■□□ 2.39
HOXC13-201ENST00000243056 PRKCSHP14314 528 aaPredicted RBP29.95■■■□□ 2.38
HOXC13-201ENST00000243056 KIF21BO75037 1637 aa29.9■■■□□ 2.38
HOXC13-201ENST00000243056 CARMIL1Q5VZK9 1371 aa29.9■■■□□ 2.38
HOXC13-201ENST00000243056 WDR97A6NE52 1622 aa29.9■■■□□ 2.38
HOXC13-201ENST00000243056 GAPVD1Q14C86 1478 aa29.89■■■□□ 2.37
HOXC13-201ENST00000243056 TNIKQ9UKE5 1360 aa29.87■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms