Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB3O15347 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
HMGB3O15347 CAHM-201ENST00000604200 896 ntBASIC19.14■□□□□ 0.65
HMGB3O15347 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HMGB3O15347 AL139125.2-201ENST00000623134 1869 ntBASIC19.13■□□□□ 0.65
HMGB3O15347 AC022211.4-201ENST00000625094 2161 ntBASIC19.13■□□□□ 0.65
HMGB3O15347 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGB3O15347 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 AC010501.1-201ENST00000606270 1962 ntBASIC19.12■□□□□ 0.65
HMGB3O15347 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
HMGB3O15347 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
HMGB3O15347 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
HMGB3O15347 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.1■□□□□ 0.65
HMGB3O15347 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGB3O15347 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGB3O15347 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.08■□□□□ 0.65
HMGB3O15347 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB3O15347 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB3O15347 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB3O15347 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.08■□□□□ 0.64
HMGB3O15347 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
HMGB3O15347 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB3O15347 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
HMGB3O15347 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGB3O15347 LINC00273-201ENST00000539813 1452 ntBASIC19.06■□□□□ 0.64
HMGB3O15347 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGB3O15347 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB3O15347 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGB3O15347 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGB3O15347 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HMGB3O15347 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 MIR762-201ENST00000390236 83 ntBASIC19.05■□□□□ 0.64
HMGB3O15347 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms