Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.14■□□□□ 0.65
HMGB3O15347 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
HMGB3O15347 CAHM-201ENST00000604200 896 ntBASIC19.14■□□□□ 0.65
HMGB3O15347 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGB3O15347 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HMGB3O15347 AL139125.2-201ENST00000623134 1869 ntBASIC19.13■□□□□ 0.65
HMGB3O15347 AC022211.4-201ENST00000625094 2161 ntBASIC19.13■□□□□ 0.65
HMGB3O15347 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGB3O15347 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGB3O15347 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGB3O15347 AC010501.1-201ENST00000606270 1962 ntBASIC19.12■□□□□ 0.65
HMGB3O15347 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
HMGB3O15347 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HMGB3O15347 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
HMGB3O15347 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
HMGB3O15347 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGB3O15347 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 RPS2-209ENST00000529806 993 ntTSL 3 BASIC19.1■□□□□ 0.65
HMGB3O15347 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGB3O15347 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.1■□□□□ 0.65
HMGB3O15347 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGB3O15347 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HMGB3O15347 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HMGB3O15347 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.08■□□□□ 0.65
HMGB3O15347 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HMGB3O15347 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB3O15347 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.08■□□□□ 0.64
HMGB3O15347 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB3O15347 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.08■□□□□ 0.64
HMGB3O15347 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
HMGB3O15347 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HMGB3O15347 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
HMGB3O15347 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
HMGB3O15347 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGB3O15347 LINC00273-201ENST00000539813 1452 ntBASIC19.06■□□□□ 0.64
HMGB3O15347 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGB3O15347 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC19.06■□□□□ 0.64
HMGB3O15347 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC19.06■□□□□ 0.64
HMGB3O15347 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HMGB3O15347 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.06■□□□□ 0.64
HMGB3O15347 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HMGB3O15347 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HMGB3O15347 MIR762-201ENST00000390236 83 ntBASIC19.05■□□□□ 0.64
HMGB3O15347 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms