Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS13AQ96RL7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS13AQ96RL7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS13AQ96RL7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.27■■□□□ 1.48
VPS13AQ96RL7 AC090192.1-201ENST00000517740 490 ntBASIC24.27■■□□□ 1.48
VPS13AQ96RL7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
VPS13AQ96RL7 AL139393.2-201ENST00000608721 2025 ntBASIC24.26■■□□□ 1.47
VPS13AQ96RL7 KRT18P24-201ENST00000344739 1156 ntBASIC24.26■■□□□ 1.47
VPS13AQ96RL7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.25■■□□□ 1.47
VPS13AQ96RL7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
VPS13AQ96RL7 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
VPS13AQ96RL7 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
VPS13AQ96RL7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
VPS13AQ96RL7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.2■■□□□ 1.47
VPS13AQ96RL7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.2■■□□□ 1.47
VPS13AQ96RL7 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
VPS13AQ96RL7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 WHAMMP3-201ENST00000611636 1609 ntBASIC24.19■■□□□ 1.46
VPS13AQ96RL7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 AC087623.3-201ENST00000607047 1098 ntBASIC24.19■■□□□ 1.46
VPS13AQ96RL7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
VPS13AQ96RL7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 AC142381.2-201ENST00000566120 298 ntBASIC24.18■■□□□ 1.46
VPS13AQ96RL7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
VPS13AQ96RL7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 RASSF1-AS1-201ENST00000629828 790 ntBASIC24.17■■□□□ 1.46
VPS13AQ96RL7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 AL162430.1-201ENST00000480705 870 ntBASIC24.17■■□□□ 1.46
VPS13AQ96RL7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.17■■□□□ 1.46
VPS13AQ96RL7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
VPS13AQ96RL7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 AP004833.2-201ENST00000532228 1454 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-1-201ENST00000616420 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-2-201ENST00000616483 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-4-201ENST00000617390 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 MIR6724-3-201ENST00000622482 92 ntBASIC24.15■■□□□ 1.46
VPS13AQ96RL7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS13AQ96RL7 AC097381.1-201ENST00000429019 1296 ntBASIC24.14■■□□□ 1.46
VPS13AQ96RL7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.14■■□□□ 1.46
VPS13AQ96RL7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS13AQ96RL7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS13AQ96RL7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC24.14■■□□□ 1.45
VPS13AQ96RL7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
VPS13AQ96RL7 MIR6821-201ENST00000617625 74 ntBASIC24.13■■□□□ 1.45
VPS13AQ96RL7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC24.13■■□□□ 1.45
VPS13AQ96RL7 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
VPS13AQ96RL7 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
VPS13AQ96RL7 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 995.6 ms