Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 AKT2-208ENST00000416994 904 ntTSL 426.85■■□□□ 1.898e-6■□□□□ 8.3
UPF1Q92900 TAF15-206ENST00000603967 656 ntTSL 325.06■■□□□ 1.68e-6■□□□□ 8.3
UPF1Q92900 TAF15-210ENST00000604694 891 ntTSL 525.06■■□□□ 1.68e-6■□□□□ 8.3
UPF1Q92900 AKT2-240ENST00000584288 1706 ntTSL 224.39■■□□□ 1.58e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.268e-6■□□□□ 8.3
UPF1Q92900 AKT2-228ENST00000537834 1402 ntTSL 222.74■■□□□ 1.238e-6■□□□□ 8.3
UPF1Q92900 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.168e-6■□□□□ 8.3
UPF1Q92900 AKT2-212ENST00000441941 974 ntTSL 421.59■■□□□ 1.058e-6■□□□□ 8.3
UPF1Q92900 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.4■■□□□ 1.028e-6■□□□□ 8.3
UPF1Q92900 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.978e-6■□□□□ 8.3
UPF1Q92900 AKT2-207ENST00000416362 974 ntTSL 520.94■□□□□ 0.948e-6■□□□□ 8.3
UPF1Q92900 AKT2-211ENST00000427375 554 ntTSL 420.94■□□□□ 0.948e-6■□□□□ 8.3
UPF1Q92900 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.928e-6■□□□□ 8.3
UPF1Q92900 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.868e-6■□□□□ 8.3
UPF1Q92900 AKT2-205ENST00000392037 681 ntTSL 220.12■□□□□ 0.818e-6■□□□□ 8.3
UPF1Q92900 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.678e-6■□□□□ 8.3
UPF1Q92900 AKT2-213ENST00000452077 577 ntTSL 317.71■□□□□ 0.438e-6■□□□□ 8.3
UPF1Q92900 AKT2-229ENST00000578123 564 ntTSL 416.44■□□□□ 0.228e-6■□□□□ 8.3
UPF1Q92900 AKT2-241ENST00000596634 583 ntTSL 516.23■□□□□ 0.198e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.158e-6■□□□□ 8.3
UPF1Q92900 AKT2-224ENST00000492463 737 ntTSL 515.62■□□□□ 0.098e-6■□□□□ 8.3
UPF1Q92900 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.048e-6■□□□□ 8.3
UPF1Q92900 AKT2-201ENST00000311278 1393 ntTSL 1 (best) BASIC14.83□□□□□ -0.048e-6■□□□□ 8.3
UPF1Q92900 AKT2-202ENST00000358335 546 ntTSL 414.73□□□□□ -0.058e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-208ENST00000456458 1742 ntTSL 1 (best)14.69□□□□□ -0.068e-6■□□□□ 8.3
UPF1Q92900 AKT2-219ENST00000486368 606 ntTSL 414.27□□□□□ -0.138e-6■□□□□ 8.3
UPF1Q92900 AKT2-209ENST00000423127 798 ntTSL 514.03□□□□□ -0.168e-6■□□□□ 8.3
UPF1Q92900 AKT2-236ENST00000580747 525 ntTSL 413.55□□□□□ -0.248e-6■□□□□ 8.3
UPF1Q92900 CTPS1-202ENST00000372621 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.418e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-214ENST00000620705 1704 ntTSL 1 (best) BASIC12.25□□□□□ -0.458e-6■□□□□ 8.3
UPF1Q92900 STARD7-203ENST00000462501 753 ntTSL 212.05□□□□□ -0.488e-6■□□□□ 8.3
UPF1Q92900 PDLIM5-207ENST00000503974 2081 ntTSL 2 BASIC11.7□□□□□ -0.542e-10■□□□□ 8.3
UPF1Q92900 PDLIM5-206ENST00000437932 5713 ntTSL 5 BASIC11.48□□□□□ -0.572e-10■□□□□ 8.3
UPF1Q92900 SCAF11-210ENST00000547654 416 ntTSL 211.27□□□□□ -0.618e-6■□□□□ 8.3
UPF1Q92900 SCAF11-213ENST00000550629 579 ntTSL 211.27□□□□□ -0.618e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.728e-6■□□□□ 8.3
UPF1Q92900 SCAF11-202ENST00000369367 7543 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.798e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC9.99□□□□□ -0.818e-6■□□□□ 8.3
UPF1Q92900 PDLIM5-201ENST00000317968 6083 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.892e-10■□□□□ 8.3
UPF1Q92900 PDLIM5-222ENST00000615540 6219 ntTSL 1 (best) BASIC9.03□□□□□ -0.962e-10■□□□□ 8.3
UPF1Q92900 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.022e-86■□□□□ 8.3
UPF1Q92900 STARD7-205ENST00000488084 384 ntTSL 28.35□□□□□ -1.078e-6■□□□□ 8.3
UPF1Q92900 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC8.17□□□□□ -1.18e-6■□□□□ 8.3
UPF1Q92900 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.328e-6■□□□□ 8.3
UPF1Q92900 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.29□□□□□ -0.282e-12■□□□□ 8.3
UPF1Q92900 INPPL1-202ENST00000320683 717 ntTSL 235.55■■■■□ 3.281e-8■□□□□ 8.3
UPF1Q92900 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.651e-7■□□□□ 8.3
UPF1Q92900 TPM4-214ENST00000591645 653 ntTSL 310.21□□□□□ -0.771e-7■□□□□ 8.3
UPF1Q92900 SARS-202ENST00000369923 1882 ntTSL 5 BASIC17.86■□□□□ 0.456e-6■□□□□ 8.2
UPF1Q92900 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.176e-6■□□□□ 8.2
UPF1Q92900 SARS-205ENST00000477544 694 ntTSL 214.64□□□□□ -0.076e-6■□□□□ 8.2
UPF1Q92900 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC33.82■■■■□ 37e-12■□□□□ 8.2
UPF1Q92900 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC33.82■■■■□ 37e-12■□□□□ 8.2
UPF1Q92900 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC33.82■■■■□ 37e-12■□□□□ 8.2
UPF1Q92900 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC31.13■■■□□ 2.577e-12■□□□□ 8.2
UPF1Q92900 INPPL1-212ENST00000541752 856 ntTSL 221.35■■□□□ 1.014e-9■□□□□ 8.2
UPF1Q92900 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.714e-9■□□□□ 8.2
UPF1Q92900 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.27■□□□□ 0.354e-9■□□□□ 8.2
UPF1Q92900 CLINT1-205ENST00000522381 721 ntTSL 514.55□□□□□ -0.084e-9■□□□□ 8.2
UPF1Q92900 CLINT1-201ENST00000411809 3440 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.264e-9■□□□□ 8.2
UPF1Q92900 CLINT1-210ENST00000530742 3344 ntTSL 5 BASIC12.89□□□□□ -0.354e-9■□□□□ 8.2
UPF1Q92900 CLINT1-206ENST00000523094 3987 ntTSL 2 BASIC12.85□□□□□ -0.354e-9■□□□□ 8.2
UPF1Q92900 CLINT1-203ENST00000521047 733 ntTSL 211.27□□□□□ -0.614e-9■□□□□ 8.2
UPF1Q92900 CLINT1-202ENST00000518855 3394 ntTSL 26.49□□□□□ -1.374e-9■□□□□ 8.2
UPF1Q92900 CLINT1-208ENST00000524306 2905 ntTSL 1 (best)5.86□□□□□ -1.474e-9■□□□□ 8.2
UPF1Q92900 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.634e-9■□□□□ 8.2
UPF1Q92900 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.5□□□□□ -2.014e-9■□□□□ 8.2
UPF1Q92900 SRSF1-206ENST00000583741 1465 ntTSL 531.03■■■□□ 2.561e-28■□□□□ 8.2
UPF1Q92900 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC25.87■■□□□ 1.731e-28■□□□□ 8.2
UPF1Q92900 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC25.55■■□□□ 1.681e-28■□□□□ 8.2
UPF1Q92900 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.291e-28■□□□□ 8.2
UPF1Q92900 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC34.23■■■■□ 3.071e-6■□□□□ 8.2
UPF1Q92900 JUND-202ENST00000600972 500 ntTSL 232.79■■■□□ 2.841e-6■□□□□ 8.2
UPF1Q92900 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.51■■□□□ 1.831e-6■□□□□ 8.2
UPF1Q92900 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC22.12■■□□□ 1.131e-6■□□□□ 8.2
UPF1Q92900 GORASP2-207ENST00000486498 2096 ntTSL 217.08■□□□□ 0.321e-6■□□□□ 8.2
UPF1Q92900 GORASP2-202ENST00000442798 1976 ntTSL 217.02■□□□□ 0.321e-6■□□□□ 8.2
UPF1Q92900 HACD3-207ENST00000566074 1658 ntTSL 5 BASIC15.93■□□□□ 0.141e-6■□□□□ 8.2
UPF1Q92900 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC15.93■□□□□ 0.141e-6■□□□□ 8.2
UPF1Q92900 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.021e-6■□□□□ 8.2
UPF1Q92900 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC11.8□□□□□ -0.521e-6■□□□□ 8.2
UPF1Q92900 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC8.7□□□□□ -1.021e-6■□□□□ 8.2
UPF1Q92900 FPGS-208ENST00000467826 829 ntTSL 529.54■■■□□ 2.324e-6■□□□□ 8.2
UPF1Q92900 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC26.77■■□□□ 1.884e-6■□□□□ 8.2
UPF1Q92900 UGDH-211ENST00000515021 861 ntTSL 526.37■■□□□ 1.814e-6■□□□□ 8.2
UPF1Q92900 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.05■■□□□ 1.64e-6■□□□□ 8.2
UPF1Q92900 UGDH-203ENST00000503779 575 ntTSL 424.1■■□□□ 1.454e-6■□□□□ 8.2
UPF1Q92900 UGDH-207ENST00000509391 577 ntTSL 324.1■■□□□ 1.454e-6■□□□□ 8.2
UPF1Q92900 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.354e-6■□□□□ 8.2
UPF1Q92900 UGDH-210ENST00000514106 568 ntTSL 422.19■■□□□ 1.144e-6■□□□□ 8.2
UPF1Q92900 UGDH-212ENST00000515398 584 ntTSL 522.19■■□□□ 1.144e-6■□□□□ 8.2
UPF1Q92900 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 14e-6■□□□□ 8.2
UPF1Q92900 FPGS-207ENST00000460181 2206 ntTSL 1 (best)21.19■□□□□ 0.984e-6■□□□□ 8.2
UPF1Q92900 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.88■□□□□ 0.934e-6■□□□□ 8.2
UPF1Q92900 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.144e-6■□□□□ 8.2
UPF1Q92900 PHF7-210ENST00000614886 1421 ntTSL 1 (best) BASIC15.39■□□□□ 0.054e-6■□□□□ 8.2
UPF1Q92900 PHF7-202ENST00000347025 1472 ntTSL 5 BASIC13.93□□□□□ -0.184e-6■□□□□ 8.2
UPF1Q92900 UGDH-209ENST00000510881 549 ntTSL 310.03□□□□□ -0.84e-6■□□□□ 8.2
UPF1Q92900 PHF7-204ENST00000461861 1303 ntTSL 59.79□□□□□ -0.844e-6■□□□□ 8.2
UPF1Q92900 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC9.67□□□□□ -0.864e-6■□□□□ 8.2
Retrieved 100 of 15,879 protein–RNA pairs in 271 ms