RNA–Protein interactions for RNA: ENST00000344824.10

TPM4-202, Transcript of tropomyosin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TPM4, Length 1,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-202ENST00000344824 NISCHQ9Y2I1 1504 aa33.47■■■□□ 2.95
TPM4-202ENST00000344824 CCDC180Q9P1Z9 1646 aa29.9■■■□□ 2.38
TPM4-202ENST00000344824 ABCC9O60706 1549 aa29.36■■■□□ 2.29
TPM4-202ENST00000344824 RB1CC1Q8TDY2 1594 aa28.18■■■□□ 2.1
TPM4-202ENST00000344824 DCAF8L2P0C7V8 631 aa28.09■■■□□ 2.09
TPM4-202ENST00000344824 NACADO15069 1562 aa28.05■■■□□ 2.08
TPM4-202ENST00000344824 ZCCHC6Q5VYS8 1495 aaKnown RBP27.88■■■□□ 2.05
TPM4-202ENST00000344824 MYO15BQ96JP2 1530 aa27.75■■■□□ 2.03
TPM4-202ENST00000344824 UNC13AQ9UPW8 1703 aa27.67■■■□□ 2.02
TPM4-202ENST00000344824 DCAF1Q9Y4B6 1507 aa27.63■■■□□ 2.01
TPM4-202ENST00000344824 PABPN1Q86U42 306 aaKnown RBP eCLIP27.36■■□□□ 1.97
TPM4-202ENST00000344824 SCRIBQ14160 1630 aa27.35■■□□□ 1.97
TPM4-202ENST00000344824 BICRAQ9NZM4 1560 aa27.28■■□□□ 1.96
TPM4-202ENST00000344824 AEBP2Q6ZN18 517 aaPredicted RBP26.96■■□□□ 1.91
TPM4-202ENST00000344824 SHROOM4Q9ULL8 1493 aa26.92■■□□□ 1.9
TPM4-202ENST00000344824 DNAJC5BQ9UF47 199 aa26.9■■□□□ 1.9
TPM4-202ENST00000344824 EIF4G1Q04637 1599 aaKnown RBP26.61■■□□□ 1.85
TPM4-202ENST00000344824 CC2D2AQ9P2K1 1620 aa26.56■■□□□ 1.84
TPM4-202ENST00000344824 CECR2Q9BXF3 1484 aa26.35■■□□□ 1.81
TPM4-202ENST00000344824 SMARCA4P51532 1647 aa26.08■■□□□ 1.77
TPM4-202ENST00000344824 BAZ1AQ9NRL2 1556 aaPredicted RBP26■■□□□ 1.75
TPM4-202ENST00000344824 SMARCA2P51531 1590 aa25.88■■□□□ 1.73
TPM4-202ENST00000344824 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
TPM4-202ENST00000344824 MROH2BQ7Z745 1585 aa25.83■■□□□ 1.73
TPM4-202ENST00000344824 NCAPD3P42695 1498 aa25.81■■□□□ 1.72
TPM4-202ENST00000344824 HMGXB3Q12766 1538 aa25.78■■□□□ 1.72
TPM4-202ENST00000344824 CHIC1Q5VXU3 224 aa25.73■■□□□ 1.71
TPM4-202ENST00000344824 PEG3Q9GZU2 1588 aa25.73■■□□□ 1.71
TPM4-202ENST00000344824 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
TPM4-202ENST00000344824 WIZO95785 1651 aa25.63■■□□□ 1.69
TPM4-202ENST00000344824 RSF1Q96T23 1441 aaPredicted RBP25.43■■□□□ 1.66
TPM4-202ENST00000344824 NESP48681 1621 aa25.36■■□□□ 1.65
TPM4-202ENST00000344824 ERCC6Q03468 1493 aa25.34■■□□□ 1.65
TPM4-202ENST00000344824 TOP2AP11388 1531 aaKnown RBP25.29■■□□□ 1.64
TPM4-202ENST00000344824 LAMC3Q9Y6N6 1575 aa25.26■■□□□ 1.63
TPM4-202ENST00000344824 KIF21AQ7Z4S6 1674 aa25.17■■□□□ 1.62
TPM4-202ENST00000344824 CADPSQ9ULU8 1353 aa25.08■■□□□ 1.61
TPM4-202ENST00000344824 PDS5BQ9NTI5 1447 aa25.04■■□□□ 1.6
TPM4-202ENST00000344824 THOC2Q8NI27 1593 aaKnown RBP25.03■■□□□ 1.6
TPM4-202ENST00000344824 CUX2O14529 1486 aa25.02■■□□□ 1.6
TPM4-202ENST00000344824 PRDM2Q13029 1718 aa24.96■■□□□ 1.59
TPM4-202ENST00000344824 CCDC88BA6NC98 1476 aa24.94■■□□□ 1.58
TPM4-202ENST00000344824 CFTRP13569 1480 aa24.91■■□□□ 1.58
TPM4-202ENST00000344824 CEP164Q9UPV0 1460 aa24.88■■□□□ 1.57
TPM4-202ENST00000344824 FANCD2Q9BXW9 1451 aa24.87■■□□□ 1.57
TPM4-202ENST00000344824 MRC2Q9UBG0 1479 aa24.84■■□□□ 1.57
TPM4-202ENST00000344824 SUPT5HO00267 1087 aaKnown RBP24.81■■□□□ 1.56
TPM4-202ENST00000344824 WDR62O43379 1518 aa24.76■■□□□ 1.55
TPM4-202ENST00000344824 URB2Q14146 1524 aaKnown RBP24.63■■□□□ 1.53
TPM4-202ENST00000344824 TOPBP1Q92547 1522 aa24.47■■□□□ 1.51
TPM4-202ENST00000344824 DNMBPQ6XZF7 1577 aa24.46■■□□□ 1.51
TPM4-202ENST00000344824 ABCC8Q09428 1581 aa24.39■■□□□ 1.5
TPM4-202ENST00000344824 IFT140Q96RY7 1462 aa24.32■■□□□ 1.48
TPM4-202ENST00000344824 DNAJC5Q9H3Z4 198 aa24.27■■□□□ 1.48
TPM4-202ENST00000344824 POLA1P09884 1462 aaPredicted RBP24.25■■□□□ 1.47
TPM4-202ENST00000344824 CUX1P39880 1505 aa24.24■■□□□ 1.47
TPM4-202ENST00000344824 ZNF608Q9ULD9 1512 aaPredicted RBP24.24■■□□□ 1.47
TPM4-202ENST00000344824 EIF4G3O43432 1585 aaKnown RBP24.23■■□□□ 1.47
TPM4-202ENST00000344824 TARBP1Q13395 1621 aaKnown RBP24.22■■□□□ 1.47
TPM4-202ENST00000344824 FGD5Q6ZNL6 1462 aa24.2■■□□□ 1.46
TPM4-202ENST00000344824 RAD54L2Q9Y4B4 1467 aa24.16■■□□□ 1.46
TPM4-202ENST00000344824 SOGA1O94964 1423 aa24.11■■□□□ 1.45
TPM4-202ENST00000344824 AQRO60306 1485 aaKnown RBP eCLIP24.08■■□□□ 1.447e-7■■■■□ 21.1
TPM4-202ENST00000344824 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
TPM4-202ENST00000344824 BIVM-ERCC5R4GMW8 1640 aa24.06■■□□□ 1.44
TPM4-202ENST00000344824 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
TPM4-202ENST00000344824 WRNQ14191 1432 aaPredicted RBP eCLIP24.03■■□□□ 1.44
TPM4-202ENST00000344824 TOP2BQ02880 1626 aa24.02■■□□□ 1.44
TPM4-202ENST00000344824 CHD1O14646 1710 aa24.01■■□□□ 1.43
TPM4-202ENST00000344824 TDRD9Q8NDG6 1382 aaKnown RBP24■■□□□ 1.43
TPM4-202ENST00000344824 PBRM1Q86U86 1689 aa23.97■■□□□ 1.43
TPM4-202ENST00000344824 ABCA10Q8WWZ4 1543 aa23.91■■□□□ 1.42
TPM4-202ENST00000344824 OSCARQ8IYS5 282 aa23.91■■□□□ 1.42
TPM4-202ENST00000344824 SNAPC4Q5SXM2 1469 aa23.9■■□□□ 1.42
TPM4-202ENST00000344824 ABCA5Q8WWZ7 1642 aa23.9■■□□□ 1.42
TPM4-202ENST00000344824 FBLN2P98095 1184 aa23.86■■□□□ 1.41
TPM4-202ENST00000344824 GRIN2BQ13224 1484 aa23.86■■□□□ 1.41
TPM4-202ENST00000344824 GAPVD1Q14C86 1478 aa23.86■■□□□ 1.41
TPM4-202ENST00000344824 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
TPM4-202ENST00000344824 SYNJ2O15056 1496 aa23.72■■□□□ 1.39
TPM4-202ENST00000344824 CHMP7Q8WUX9 453 aaPredicted RBP23.71■■□□□ 1.39
TPM4-202ENST00000344824 ADAMTS12P58397 1594 aa23.7■■□□□ 1.38
TPM4-202ENST00000344824 RIMBP3CA6NJZ7 1639 aa23.69■■□□□ 1.38
TPM4-202ENST00000344824 RIMBP3BA6NNM3 1639 aa23.69■■□□□ 1.38
TPM4-202ENST00000344824 RIMBP3Q9UFD9 1639 aa23.69■■□□□ 1.38
TPM4-202ENST00000344824 ERICH3Q5RHP9 1530 aa23.63■■□□□ 1.37
TPM4-202ENST00000344824 ARHGEF11O15085 1522 aa23.62■■□□□ 1.37
TPM4-202ENST00000344824 TRIM41Q8WV44 630 aa23.62■■□□□ 1.37
TPM4-202ENST00000344824 CLASP1Q7Z460 1538 aa23.59■■□□□ 1.37
TPM4-202ENST00000344824 GRIN2AQ12879 1464 aa23.57■■□□□ 1.36
TPM4-202ENST00000344824 FHAD1B1AJZ9 1412 aa23.55■■□□□ 1.36
TPM4-202ENST00000344824 KIF27Q86VH2 1401 aa23.52■■□□□ 1.36
TPM4-202ENST00000344824 CEP170Q5SW79 1584 aa23.5■■□□□ 1.35
TPM4-202ENST00000344824 CUL7Q14999 1698 aa23.48■■□□□ 1.35
TPM4-202ENST00000344824 ARAP1Q96P48 1450 aa23.42■■□□□ 1.34
TPM4-202ENST00000344824 NUP160Q12769 1436 aa23.42■■□□□ 1.34
TPM4-202ENST00000344824 IGF1RP08069 1367 aa23.36■■□□□ 1.33
TPM4-202ENST00000344824 CYB5RLQ6IPT4 315 aa23.36■■□□□ 1.33
TPM4-202ENST00000344824 RUSC2Q8N2Y8 1516 aa23.35■■□□□ 1.33
TPM4-202ENST00000344824 SHROOM2Q13796 1616 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms