RNA–Protein interactions for RNA: ENST00000524306.1

CLINT1-208, Transcript of clathrin interactor 1, humanhuman

TSL 1 (best)

Gene CLINT1, Length 2,905 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLINT1-208ENST00000524306 NISCHQ9Y2I1 1504 aa11.94□□□□□ -0.5
CLINT1-208ENST00000524306 CCDC180Q9P1Z9 1646 aa10.63□□□□□ -0.71
CLINT1-208ENST00000524306 DCAF1Q9Y4B6 1507 aa10.12□□□□□ -0.79
CLINT1-208ENST00000524306 ZCCHC6Q5VYS8 1495 aaKnown RBP10.1□□□□□ -0.79
CLINT1-208ENST00000524306 AEBP2Q6ZN18 517 aaPredicted RBP10.09□□□□□ -0.79
CLINT1-208ENST00000524306 MYO15BQ96JP2 1530 aa10.04□□□□□ -0.8
CLINT1-208ENST00000524306 NACADO15069 1562 aa9.77□□□□□ -0.85
CLINT1-208ENST00000524306 CHIC1Q5VXU3 224 aa9.75□□□□□ -0.85
CLINT1-208ENST00000524306 RB1CC1Q8TDY2 1594 aa9.61□□□□□ -0.87
CLINT1-208ENST00000524306 SHROOM4Q9ULL8 1493 aa9.53□□□□□ -0.88
CLINT1-208ENST00000524306 ABCC9O60706 1549 aa9.49□□□□□ -0.89
CLINT1-208ENST00000524306 POTEDQ86YR6 584 aa9.49□□□□□ -0.89
CLINT1-208ENST00000524306 UNC13AQ9UPW8 1703 aa9.43□□□□□ -0.9
CLINT1-208ENST00000524306 SCRIBQ14160 1630 aa9.4□□□□□ -0.9
CLINT1-208ENST00000524306 SUPT5HO00267 1087 aaKnown RBP9.33□□□□□ -0.92
CLINT1-208ENST00000524306 BICRAQ9NZM4 1560 aa9.29□□□□□ -0.92
CLINT1-208ENST00000524306 DCAF8L2P0C7V8 631 aa9.28□□□□□ -0.92
CLINT1-208ENST00000524306 BAZ1AQ9NRL2 1556 aaPredicted RBP9.26□□□□□ -0.93
CLINT1-208ENST00000524306 PEG3Q9GZU2 1588 aa9.25□□□□□ -0.93
CLINT1-208ENST00000524306 SMARCA4P51532 1647 aa9.19□□□□□ -0.94
CLINT1-208ENST00000524306 RSF1Q96T23 1441 aaPredicted RBP9.19□□□□□ -0.94
CLINT1-208ENST00000524306 MROH2BQ7Z745 1585 aa9.11□□□□□ -0.95
CLINT1-208ENST00000524306 TOP2AP11388 1531 aaKnown RBP9.1□□□□□ -0.95
CLINT1-208ENST00000524306 SMARCA2P51531 1590 aa9.09□□□□□ -0.95
CLINT1-208ENST00000524306 CECR2Q9BXF3 1484 aa9.08□□□□□ -0.96
CLINT1-208ENST00000524306 EIF4G1Q04637 1599 aaKnown RBP9.06□□□□□ -0.96
CLINT1-208ENST00000524306 SENP3Q9H4L4 574 aaPredicted RBP9.06□□□□□ -0.96
CLINT1-208ENST00000524306 WIZO95785 1651 aa9.04□□□□□ -0.96
CLINT1-208ENST00000524306 HMGXB3Q12766 1538 aa9.03□□□□□ -0.96
CLINT1-208ENST00000524306 ATAD2BQ9ULI0 1458 aa8.95□□□□□ -0.98
CLINT1-208ENST00000524306 NCAPD3P42695 1498 aa8.95□□□□□ -0.98
CLINT1-208ENST00000524306 PRDM2Q13029 1718 aa8.92□□□□□ -0.98
CLINT1-208ENST00000524306 BAZ1BQ9UIG0 1483 aaKnown RBP8.87□□□□□ -0.99
CLINT1-208ENST00000524306 CCDC88BA6NC98 1476 aa8.86□□□□□ -0.99
CLINT1-208ENST00000524306 TRIM41Q8WV44 630 aa8.84□□□□□ -0.99
CLINT1-208ENST00000524306 HRCP23327 699 aa8.83□□□□□ -1
CLINT1-208ENST00000524306 LOC105371045A0A1W2PR82 267 aa8.78□□□□□ -1
CLINT1-208ENST00000524306 CC2D2AQ9P2K1 1620 aa8.77□□□□□ -1.01
CLINT1-208ENST00000524306 BIVM-ERCC5R4GMW8 1640 aa8.77□□□□□ -1.01
CLINT1-208ENST00000524306 EEA1Q15075 1411 aa8.76□□□□□ -1.01
CLINT1-208ENST00000524306 PABPN1Q86U42 306 aaKnown RBP eCLIP8.76□□□□□ -1.01
CLINT1-208ENST00000524306 TRIM26Q12899 539 aaPredicted RBP8.76□□□□□ -1.01
CLINT1-208ENST00000524306 CFTRP13569 1480 aa8.73□□□□□ -1.01
CLINT1-208ENST00000524306 TOP2BQ02880 1626 aa8.71□□□□□ -1.02
CLINT1-208ENST00000524306 PCGF6Q9BYE7 350 aa8.7□□□□□ -1.02
CLINT1-208ENST00000524306 LAMC3Q9Y6N6 1575 aa8.68□□□□□ -1.02
CLINT1-208ENST00000524306 WRNQ14191 1432 aaPredicted RBP eCLIP8.68□□□□□ -1.02
CLINT1-208ENST00000524306 PHF23Q9BUL5 403 aaPredicted RBP8.66□□□□□ -1.02
CLINT1-208ENST00000524306 ABCC8Q09428 1581 aa8.64□□□□□ -1.03
CLINT1-208ENST00000524306 ZEB1P37275 1124 aaPredicted RBP8.64□□□□□ -1.03
CLINT1-208ENST00000524306 TNIKQ9UKE5 1360 aa8.63□□□□□ -1.03
CLINT1-208ENST00000524306 SYNJ1O43426 1573 aa8.63□□□□□ -1.03
CLINT1-208ENST00000524306 KIF21BO75037 1637 aa8.62□□□□□ -1.03
CLINT1-208ENST00000524306 CADPSQ9ULU8 1353 aa8.6□□□□□ -1.03
CLINT1-208ENST00000524306 WDR97A6NE52 1622 aa8.58□□□□□ -1.04
CLINT1-208ENST00000524306 GOLGA3Q08378 1498 aa8.58□□□□□ -1.04
CLINT1-208ENST00000524306 DNMBPQ6XZF7 1577 aa8.56□□□□□ -1.04
CLINT1-208ENST00000524306 SOGA1O94964 1423 aa8.56□□□□□ -1.04
CLINT1-208ENST00000524306 CUX1P39880 1505 aa8.56□□□□□ -1.04
CLINT1-208ENST00000524306 ERICH3Q5RHP9 1530 aa8.56□□□□□ -1.04
CLINT1-208ENST00000524306 CEP164Q9UPV0 1460 aa8.56□□□□□ -1.04
CLINT1-208ENST00000524306 FAM9AQ8IZU1 332 aaPredicted RBP8.55□□□□□ -1.04
CLINT1-208ENST00000524306 CSRNP3Q8WYN3 585 aa8.55□□□□□ -1.04
CLINT1-208ENST00000524306 CEP162Q5TB80 1403 aa8.55□□□□□ -1.04
CLINT1-208ENST00000524306 RUSC2Q8N2Y8 1516 aa8.5□□□□□ -1.05
CLINT1-208ENST00000524306 FANCD2Q9BXW9 1451 aa8.49□□□□□ -1.05
CLINT1-208ENST00000524306 PDS5BQ9NTI5 1447 aa8.47□□□□□ -1.05
CLINT1-208ENST00000524306 CUL7Q14999 1698 aa8.47□□□□□ -1.05
CLINT1-208ENST00000524306 ABCA10Q8WWZ4 1543 aa8.47□□□□□ -1.05
CLINT1-208ENST00000524306 PRXQ9BXM0 1461 aa8.46□□□□□ -1.05
CLINT1-208ENST00000524306 KIF21AQ7Z4S6 1674 aa8.45□□□□□ -1.06
CLINT1-208ENST00000524306 TOPBP1Q92547 1522 aa8.45□□□□□ -1.06
CLINT1-208ENST00000524306 ABCA5Q8WWZ7 1642 aa8.44□□□□□ -1.06
CLINT1-208ENST00000524306 WDR62O43379 1518 aa8.43□□□□□ -1.06
CLINT1-208ENST00000524306 KIF27Q86VH2 1401 aa8.43□□□□□ -1.06
CLINT1-208ENST00000524306 MSH5O43196 834 aa8.43□□□□□ -1.06
CLINT1-208ENST00000524306 VPS8Q8N3P4 1428 aa8.42□□□□□ -1.06
CLINT1-208ENST00000524306 FGD5Q6ZNL6 1462 aa8.41□□□□□ -1.06
CLINT1-208ENST00000524306 TARBP1Q13395 1621 aaKnown RBP8.41□□□□□ -1.06
CLINT1-208ENST00000524306 PPARGC1BQ86YN6 1023 aaKnown RBP8.41□□□□□ -1.06
CLINT1-208ENST00000524306 CLIP1P30622 1438 aa8.4□□□□□ -1.06
CLINT1-208ENST00000524306 URB2Q14146 1524 aaKnown RBP8.4□□□□□ -1.07
CLINT1-208ENST00000524306 MRC2Q9UBG0 1479 aa8.39□□□□□ -1.07
CLINT1-208ENST00000524306 RAPGEF2Q9Y4G8 1499 aa8.39□□□□□ -1.07
CLINT1-208ENST00000524306 POLA1P09884 1462 aaPredicted RBP8.39□□□□□ -1.07
CLINT1-208ENST00000524306 THOC2Q8NI27 1593 aaKnown RBP8.38□□□□□ -1.07
CLINT1-208ENST00000524306 UBTFP17480 764 aaKnown RBP8.37□□□□□ -1.07
CLINT1-208ENST00000524306 NESP48681 1621 aa8.36□□□□□ -1.07
CLINT1-208ENST00000524306 CTTNBP2Q8WZ74 1663 aa8.35□□□□□ -1.07
CLINT1-208ENST00000524306 PBRM1Q86U86 1689 aa8.34□□□□□ -1.07
CLINT1-208ENST00000524306 MAP3K1Q13233 1512 aa8.33□□□□□ -1.08
CLINT1-208ENST00000524306 FOXD1Q16676 465 aa8.33□□□□□ -1.08
CLINT1-208ENST00000524306 EFCAB5A4FU69 1503 aa8.32□□□□□ -1.08
CLINT1-208ENST00000524306 IFT140Q96RY7 1462 aa8.32□□□□□ -1.08
CLINT1-208ENST00000524306 ARAP1Q96P48 1450 aa8.32□□□□□ -1.08
CLINT1-208ENST00000524306 EHMT2Q96KQ7 1210 aa8.31□□□□□ -1.08
CLINT1-208ENST00000524306 CUX2O14529 1486 aa8.3□□□□□ -1.08
CLINT1-208ENST00000524306 IGF1RP08069 1367 aa8.3□□□□□ -1.08
CLINT1-208ENST00000524306 ADAMTS12P58397 1594 aa8.29□□□□□ -1.08
CLINT1-208ENST00000524306 CLSPNQ9HAW4 1339 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms