Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.88□□□□□ -0.032e-6■□□□□ 9
UPF1Q92900 ORC2-204ENST00000464147 2185 ntTSL 57.66□□□□□ -1.184e-6■□□□□ 9
UPF1Q92900 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.051e-7■□□□□ 9
UPF1Q92900 FHL3-205ENST00000485803 1468 ntTSL 1 (best)23.6■■□□□ 1.371e-7■□□□□ 9
UPF1Q92900 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.146e-6■□□□□ 9
UPF1Q92900 EPAS1-206ENST00000466465 3622 ntTSL 210.77□□□□□ -0.696e-6■□□□□ 9
UPF1Q92900 NEU4-206ENST00000415936 860 ntTSL 327.67■■■□□ 2.024e-8■□□□□ 9
UPF1Q92900 NEU4-207ENST00000420288 845 ntTSL 327.57■■■□□ 24e-8■□□□□ 9
UPF1Q92900 NEU4-209ENST00000426032 676 ntTSL 325.43■■□□□ 1.664e-8■□□□□ 9
UPF1Q92900 NEU4-208ENST00000423583 753 ntTSL 524.59■■□□□ 1.534e-8■□□□□ 9
UPF1Q92900 DHRS2-204ENST00000553600 844 ntTSL 218.56■□□□□ 0.562e-15■□□□□ 9
UPF1Q92900 IFRD1-213ENST00000476927 486 ntTSL 325.04■■□□□ 1.63e-10■□□□□ 9
UPF1Q92900 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.333e-10■□□□□ 9
UPF1Q92900 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.133e-10■□□□□ 9
UPF1Q92900 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.71□□□□□ -0.213e-10■□□□□ 9
UPF1Q92900 SF1-219ENST00000496969 455 ntTSL 311.92□□□□□ -0.52e-19■□□□□ 9
UPF1Q92900 IFRD1-208ENST00000443101 440 ntTSL 311.35□□□□□ -0.593e-10■□□□□ 9
UPF1Q92900 SF1-218ENST00000489544 584 ntTSL 211.1□□□□□ -0.632e-19■□□□□ 9
UPF1Q92900 IFRD1-207ENST00000440625 891 ntTSL 49.57□□□□□ -0.883e-10■□□□□ 9
UPF1Q92900 SF1-217ENST00000486960 719 ntTSL 28.7□□□□□ -1.022e-19■□□□□ 9
UPF1Q92900 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC8.45□□□□□ -1.063e-10■□□□□ 9
UPF1Q92900 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.04□□□□□ -1.283e-10■□□□□ 9
UPF1Q92900 CCDC85C-202ENST00000554877 543 ntTSL 417.77■□□□□ 0.445e-7■□□□□ 9
UPF1Q92900 CCDC85C-205ENST00000556348 556 ntTSL 517.54■□□□□ 0.45e-7■□□□□ 9
UPF1Q92900 P4HB-216ENST00000571617 505 ntTSL 329.96■■■□□ 2.391e-49■□□□□ 9
UPF1Q92900 MRPS25-202ENST00000420267 590 ntTSL 419.12■□□□□ 0.652e-8■□□□□ 9
UPF1Q92900 MRPS25-201ENST00000253686 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.362e-8■□□□□ 9
UPF1Q92900 MRPS25-205ENST00000449354 1119 ntTSL 2 BASIC12.2□□□□□ -0.462e-8■□□□□ 9
UPF1Q92900 PTPN18-211ENST00000481492 1394 ntTSL 229.25■■■□□ 2.272e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-218ENST00000531416 1969 ntTSL 220.29■□□□□ 0.842e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-220ENST00000531647 579 ntTSL 416.83■□□□□ 0.282e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-232ENST00000640650 2724 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.712e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.722e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-225ENST00000532383 6769 ntTSL 1 (best)9.38□□□□□ -0.912e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.052e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.222e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.32e-10■□□□□ 8.9
UPF1Q92900 EIF4G2-222ENST00000532120 223 ntTSL 36.46□□□□□ -1.382e-10■□□□□ 8.9
UPF1Q92900 UROD-208ENST00000463092 968 ntTSL 221.71■■□□□ 1.072e-11■□□□□ 8.9
UPF1Q92900 UROD-205ENST00000460906 820 ntTSL 518.43■□□□□ 0.542e-11■□□□□ 8.9
UPF1Q92900 UROD-207ENST00000462688 901 ntTSL 517.82■□□□□ 0.442e-11■□□□□ 8.9
UPF1Q92900 UROD-213ENST00000473012 632 ntTSL 317.55■□□□□ 0.42e-11■□□□□ 8.9
UPF1Q92900 UROD-218ENST00000491773 676 ntTSL 216.29■□□□□ 0.22e-11■□□□□ 8.9
UPF1Q92900 UROD-217ENST00000491300 884 ntTSL 516.19■□□□□ 0.182e-11■□□□□ 8.9
UPF1Q92900 UROD-220ENST00000496439 800 ntTSL 215.45■□□□□ 0.062e-11■□□□□ 8.9
UPF1Q92900 UROD-203ENST00000434478 600 ntTSL 314.72□□□□□ -0.052e-11■□□□□ 8.9
UPF1Q92900 UROD-204ENST00000460334 663 ntTSL 514.51□□□□□ -0.092e-11■□□□□ 8.9
UPF1Q92900 UROD-216ENST00000490385 860 ntTSL 512.77□□□□□ -0.372e-11■□□□□ 8.9
UPF1Q92900 EIF1-204ENST00000469308 815 ntTSL 231.94■■■□□ 2.75e-8■□□□□ 8.9
UPF1Q92900 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.785e-7■□□□□ 8.9
UPF1Q92900 CCNI-202ENST00000504697 610 ntTSL 414.49□□□□□ -0.091e-9■□□□□ 8.9
UPF1Q92900 LARP4B-212ENST00000614908 1826 ntTSL 423.68■■□□□ 1.383e-7■□□□□ 8.9
UPF1Q92900 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.183e-7■□□□□ 8.9
UPF1Q92900 LARP4B-201ENST00000316157 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.33e-7■□□□□ 8.9
UPF1Q92900 LARP4B-210ENST00000609318 4848 ntTSL 1 (best)10.59□□□□□ -0.713e-7■□□□□ 8.9
UPF1Q92900 SEC22B-201ENST00000578049 6922 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.739e-8■□□□□ 8.9
UPF1Q92900 MED15-223ENST00000476187 593 ntTSL 418.31■□□□□ 0.523e-15■□□□□ 8.9
UPF1Q92900 MED15-226ENST00000478831 707 ntTSL 416.43■□□□□ 0.223e-15■□□□□ 8.9
UPF1Q92900 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.132e-7■□□□□ 8.9
UPF1Q92900 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.132e-7■□□□□ 8.9
UPF1Q92900 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71e-6■□□□□ 8.9
UPF1Q92900 AC132008.2-202ENST00000414207 1286 ntTSL 529.17■■■□□ 2.261e-6■□□□□ 8.9
UPF1Q92900 TUBB6-202ENST00000417736 2163 ntTSL 228.74■■■□□ 2.191e-6■□□□□ 8.9
UPF1Q92900 POLE-206ENST00000534922 1660 ntTSL 323.38■■□□□ 1.331e-6■□□□□ 8.9
UPF1Q92900 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC21.24■□□□□ 0.991e-6■□□□□ 8.9
UPF1Q92900 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC21.02■□□□□ 0.961e-6■□□□□ 8.9
UPF1Q92900 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.591e-6■□□□□ 8.9
UPF1Q92900 FXR2-204ENST00000573057 675 ntTSL 217.19■□□□□ 0.341e-6■□□□□ 8.9
UPF1Q92900 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.23■□□□□ 0.191e-6■□□□□ 8.9
UPF1Q92900 AC132008.2-201ENST00000453454 956 ntTSL 4 BASIC15.68■□□□□ 0.11e-6■□□□□ 8.9
UPF1Q92900 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.171e-6■□□□□ 8.9
UPF1Q92900 CD24-203ENST00000615659 1026 ntAPPRIS ALT2 TSL 313.06□□□□□ -0.321e-6■□□□□ 8.9
UPF1Q92900 TUBB6-204ENST00000586691 359 ntTSL 210.11□□□□□ -0.791e-6■□□□□ 8.9
UPF1Q92900 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC7.95□□□□□ -1.141e-6■□□□□ 8.9
UPF1Q92900 PHF6-204ENST00000370803 4489 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.765e-14■□□□□ 8.9
UPF1Q92900 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.725e-14■□□□□ 8.9
UPF1Q92900 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.735e-14■□□□□ 8.9
UPF1Q92900 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.073e-8■□□□□ 8.9
UPF1Q92900 RXRA-203ENST00000484822 5215 ntTSL 214.98□□□□□ -0.013e-8■□□□□ 8.9
UPF1Q92900 EML4-204ENST00000406175 4622 ntTSL 1 (best)5.93□□□□□ -1.463e-8■□□□□ 8.9
UPF1Q92900 MAN1A2-203ENST00000422329 487 ntTSL 211.61□□□□□ -0.554e-7■□□□□ 8.9
UPF1Q92900 MAN1A2-201ENST00000356554 8576 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.884e-7■□□□□ 8.9
UPF1Q92900 SLC16A3-205ENST00000578574 958 ntTSL 234.37■■■■□ 3.094e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-220ENST00000584781 562 ntTSL 433.05■■■□□ 2.884e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-208ENST00000579572 863 ntTSL 328.81■■■□□ 2.24e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-219ENST00000584689 1033 ntTSL 228.3■■■□□ 2.124e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-206ENST00000578684 866 ntTSL 327.76■■■□□ 2.034e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-209ENST00000580098 859 ntTSL 227.58■■■□□ 2.014e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-210ENST00000580189 872 ntTSL 527.33■■□□□ 1.974e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-203ENST00000577650 545 ntTSL 326.92■■□□□ 1.94e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-212ENST00000581642 557 ntTSL 426.5■■□□□ 1.834e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-217ENST00000583237 808 ntTSL 325.23■■□□□ 1.634e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-204ENST00000578522 535 ntTSL 424.52■■□□□ 1.524e-17■□□□□ 8.8
UPF1Q92900 SLC16A3-215ENST00000582946 586 ntTSL 424.35■■□□□ 1.494e-17■□□□□ 8.8
UPF1Q92900 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.561e-7■□□□□ 8.8
UPF1Q92900 FAM118A-201ENST00000216214 3458 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.331e-7■□□□□ 8.8
UPF1Q92900 PHB2-208ENST00000543465 1518 ntTSL 529.85■■■□□ 2.371e-323■□□□□ 8.8
UPF1Q92900 PHB2-213ENST00000546111 858 ntTSL 2 BASIC29.23■■■□□ 2.271e-323■□□□□ 8.8
UPF1Q92900 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC28.25■■■□□ 2.111e-323■□□□□ 8.8
UPF1Q92900 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC27.61■■■□□ 2.011e-323■□□□□ 8.8
Retrieved 100 of 15,879 protein–RNA pairs in 354.4 ms