RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 DCAF8L2P0C7V8 631 aa17.69■□□□□ 0.42
SEC22B-201ENST00000578049 NISCHQ9Y2I1 1504 aa17.47■□□□□ 0.39
SEC22B-201ENST00000578049 SUPT5HO00267 1087 aaKnown RBP17.26■□□□□ 0.35
SEC22B-201ENST00000578049 PELP1Q8IZL8 1130 aaKnown RBP17.26■□□□□ 0.35
SEC22B-201ENST00000578049 SHROOM4Q9ULL8 1493 aa16.74■□□□□ 0.27
SEC22B-201ENST00000578049 ZEB1P37275 1124 aaPredicted RBP16.72■□□□□ 0.27
SEC22B-201ENST00000578049 MYT1Q01538 1121 aa16.69■□□□□ 0.26
SEC22B-201ENST00000578049 APLP2Q06481 763 aa16.64■□□□□ 0.25
SEC22B-201ENST00000578049 CENPBP07199 599 aaPredicted RBP16.62■□□□□ 0.25
SEC22B-201ENST00000578049 PCGF6Q9BYE7 350 aa16.5■□□□□ 0.23
SEC22B-201ENST00000578049 CCER1Q8TC90 406 aaPredicted RBP16.43■□□□□ 0.22
SEC22B-201ENST00000578049 EHMT2Q96KQ7 1210 aa16.31■□□□□ 0.2
SEC22B-201ENST00000578049 ERICH6Q7L0X2 663 aa16.27■□□□□ 0.2
SEC22B-201ENST00000578049 FAM9AQ8IZU1 332 aaPredicted RBP16.21■□□□□ 0.19
SEC22B-201ENST00000578049 TRIM41Q8WV44 630 aa16.15■□□□□ 0.18
SEC22B-201ENST00000578049 NEFLP07196 543 aa16.09■□□□□ 0.17
SEC22B-201ENST00000578049 HRCP23327 699 aa16.03■□□□□ 0.16
SEC22B-201ENST00000578049 TRIM26Q12899 539 aaPredicted RBP16.02■□□□□ 0.15
SEC22B-201ENST00000578049 TTBK1Q5TCY1 1321 aaPredicted RBP15.9■□□□□ 0.14
SEC22B-201ENST00000578049 UBTFP17480 764 aaKnown RBP15.86■□□□□ 0.13
SEC22B-201ENST00000578049 YTHDC1Q96MU7 727 aaKnown RBP15.74■□□□□ 0.11
SEC22B-201ENST00000578049 CHIC1Q5VXU3 224 aa15.64■□□□□ 0.09
SEC22B-201ENST00000578049 RANGAP1P46060 587 aaPredicted RBP15.62■□□□□ 0.09
SEC22B-201ENST00000578049 ATP1B4Q9UN42 357 aaPredicted RBP15.59■□□□□ 0.09
SEC22B-201ENST00000578049 DAXXQ9UER7 740 aaPredicted RBP15.54■□□□□ 0.08
SEC22B-201ENST00000578049 DIEXFQ68CQ4 756 aaKnown RBP15.44■□□□□ 0.06
SEC22B-201ENST00000578049 PPARGC1BQ86YN6 1023 aaKnown RBP15.39■□□□□ 0.05
SEC22B-201ENST00000578049 LOC105371045A0A1W2PR82 267 aa15.38■□□□□ 0.05
SEC22B-201ENST00000578049 RTL5Q5HYW3 569 aaPredicted RBP15.37■□□□□ 0.05
SEC22B-201ENST00000578049 HNRNPUL2Q1KMD3 747 aaKnown RBP15.3■□□□□ 0.04
SEC22B-201ENST00000578049 CLSPNQ9HAW4 1339 aa15.24■□□□□ 0.03
SEC22B-201ENST00000578049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.22■□□□□ 0.03
SEC22B-201ENST00000578049 ITGAEP38570 1179 aa15.21■□□□□ 0.03
SEC22B-201ENST00000578049 GTF3C3Q9Y5Q9 886 aa15.18■□□□□ 0.02
SEC22B-201ENST00000578049 ZNF316A6NFI3 1004 aaPredicted RBP15.16■□□□□ 0.02
SEC22B-201ENST00000578049 ACIN1Q9UKV3 1341 aaKnown RBP15.11■□□□□ 0.01
SEC22B-201ENST00000578049 POLR3GLQ9BT43 218 aa15.11■□□□□ 0.01
SEC22B-201ENST00000578049 CDK11AQ9UQ88 783 aaPredicted RBP15.09■□□□□ 0.01
SEC22B-201ENST00000578049 ANP32CO43423 234 aa15.06■□□□□ 0
SEC22B-201ENST00000578049 MYT1LQ9UL68 1186 aa15.01□□□□□ -0.01
SEC22B-201ENST00000578049 DCAF1Q9Y4B6 1507 aa14.97□□□□□ -0.01
SEC22B-201ENST00000578049 FAM50AQ14320 339 aaKnown RBP14.93□□□□□ -0.02
SEC22B-201ENST00000578049 ANP32AP39687 249 aaKnown RBP14.87□□□□□ -0.03
SEC22B-201ENST00000578049 TRIM52Q96A61 297 aa14.86□□□□□ -0.03
SEC22B-201ENST00000578049 BCANQ96GW7 911 aa14.86□□□□□ -0.03
SEC22B-201ENST00000578049 NEUROD1Q13562 356 aa14.83□□□□□ -0.04
SEC22B-201ENST00000578049 CNGB1Q14028 1251 aaPredicted RBP14.81□□□□□ -0.04
SEC22B-201ENST00000578049 CSRNP3Q8WYN3 585 aa14.81□□□□□ -0.04
SEC22B-201ENST00000578049 ZBTB47Q9UFB7 747 aaPredicted RBP14.76□□□□□ -0.05
SEC22B-201ENST00000578049 SLC4A1APQ9BWU0 796 aaKnown RBP14.72□□□□□ -0.05
SEC22B-201ENST00000578049 CANXP27824 592 aaKnown RBP14.64□□□□□ -0.07
SEC22B-201ENST00000578049 FKBP8Q14318 412 aa14.63□□□□□ -0.07
SEC22B-201ENST00000578049 GLIPR1L2Q4G1C9 344 aa14.63□□□□□ -0.07
SEC22B-201ENST00000578049 TONSLQ96HA7 1378 aa14.62□□□□□ -0.07
SEC22B-201ENST00000578049 NEFMP07197 916 aa14.61□□□□□ -0.07
SEC22B-201ENST00000578049 ANP32BQ92688 251 aaKnown RBP14.61□□□□□ -0.07
SEC22B-201ENST00000578049 ZNF326Q5BKZ1 582 aaKnown RBP14.6□□□□□ -0.07
SEC22B-201ENST00000578049 UPF2Q9HAU5 1272 aaKnown RBP14.57□□□□□ -0.08
SEC22B-201ENST00000578049 HNRNPUQ00839 825 aaKnown RBP eCLIP14.54□□□□□ -0.08
SEC22B-201ENST00000578049 ZCCHC6Q5VYS8 1495 aaKnown RBP14.53□□□□□ -0.08
SEC22B-201ENST00000578049 SCAF1Q9H7N4 1312 aaKnown RBP14.52□□□□□ -0.09
SEC22B-201ENST00000578049 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.49□□□□□ -0.09
SEC22B-201ENST00000578049 NPM2Q86SE8 214 aaKnown RBP14.47□□□□□ -0.09
SEC22B-201ENST00000578049 CCDC136Q96JN2 1154 aa14.47□□□□□ -0.09
SEC22B-201ENST00000578049 ABCC9O60706 1549 aa14.47□□□□□ -0.09
SEC22B-201ENST00000578049 EEA1Q15075 1411 aa14.47□□□□□ -0.09
SEC22B-201ENST00000578049 EIF5BO60841 1220 aaKnown RBP14.46□□□□□ -0.09
SEC22B-201ENST00000578049 DDX10Q13206 875 aaKnown RBP14.45□□□□□ -0.1
SEC22B-201ENST00000578049 ANP32EQ9BTT0 268 aa14.42□□□□□ -0.1
SEC22B-201ENST00000578049 HSP90AA1P07900 732 aaKnown RBP14.41□□□□□ -0.1
SEC22B-201ENST00000578049 PABPN1Q86U42 306 aaKnown RBP eCLIP14.41□□□□□ -0.1
SEC22B-201ENST00000578049 CCDC180Q9P1Z9 1646 aa14.39□□□□□ -0.11
SEC22B-201ENST00000578049 TMC1Q8TDI8 760 aa14.38□□□□□ -0.11
SEC22B-201ENST00000578049 MIER1Q8N108 512 aa14.38□□□□□ -0.11
SEC22B-201ENST00000578049 DDRGK1Q96HY6 314 aa14.37□□□□□ -0.11
SEC22B-201ENST00000578049 FAM9BQ8IZU0 186 aa14.36□□□□□ -0.11
SEC22B-201ENST00000578049 MRS2Q9HD23 443 aa14.35□□□□□ -0.11
SEC22B-201ENST00000578049 CLIP1P30622 1438 aa14.33□□□□□ -0.12
SEC22B-201ENST00000578049 P3H3Q8IVL6 736 aa14.32□□□□□ -0.12
SEC22B-201ENST00000578049 EIF4G2P78344 907 aaKnown RBP eCLIP14.3□□□□□ -0.12
SEC22B-201ENST00000578049 BECN1Q14457 450 aa14.28□□□□□ -0.12
SEC22B-201ENST00000578049 PPM1GO15355 546 aaPredicted RBP14.28□□□□□ -0.12
SEC22B-201ENST00000578049 WDR43Q15061 677 aaKnown RBP eCLIP14.26□□□□□ -0.13
SEC22B-201ENST00000578049 NBR1Q14596 966 aa14.26□□□□□ -0.13
SEC22B-201ENST00000578049 GOLGA3Q08378 1498 aa14.26□□□□□ -0.13
SEC22B-201ENST00000578049 ZNF777Q9ULD5 760 aaPredicted RBP14.25□□□□□ -0.13
SEC22B-201ENST00000578049 SCRIBQ14160 1630 aa14.25□□□□□ -0.13
SEC22B-201ENST00000578049 MTUS2Q5JR59 1369 aa14.23□□□□□ -0.13
SEC22B-201ENST00000578049 CEP162Q5TB80 1403 aa14.22□□□□□ -0.13
SEC22B-201ENST00000578049 ERICH6BQ5W0A0 696 aa14.21□□□□□ -0.13
SEC22B-201ENST00000578049 TNIKQ9UKE5 1360 aa14.21□□□□□ -0.13
SEC22B-201ENST00000578049 RSF1Q96T23 1441 aaPredicted RBP14.21□□□□□ -0.14
SEC22B-201ENST00000578049 FBLN2P98095 1184 aa14.21□□□□□ -0.14
SEC22B-201ENST00000578049 TIMELESSQ9UNS1 1208 aa14.2□□□□□ -0.14
SEC22B-201ENST00000578049 GOLGA6L22H0YM25 854 aa14.18□□□□□ -0.14
SEC22B-201ENST00000578049 TSPY4P0CV99 314 aa14.18□□□□□ -0.14
SEC22B-201ENST00000578049 TSPY10P0CW01 314 aa14.18□□□□□ -0.14
SEC22B-201ENST00000578049 PPP4R2Q9NY27 417 aa14.18□□□□□ -0.14
SEC22B-201ENST00000578049 TRIM44Q96DX7 344 aaPredicted RBP14.15□□□□□ -0.14
SEC22B-201ENST00000578049 SLC24A1O60721 1099 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms