Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
NKX3-1Q99801 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
NKX3-1Q99801 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX3-1Q99801 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.92■□□□□ 0.94
NKX3-1Q99801 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
NKX3-1Q99801 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX3-1Q99801 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX3-1Q99801 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
NKX3-1Q99801 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX3-1Q99801 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX3-1Q99801 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NKX3-1Q99801 MIR219A2-201ENST00000608502 1504 ntBASIC20.91■□□□□ 0.94
NKX3-1Q99801 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NKX3-1Q99801 AC138932.3-201ENST00000567634 1902 ntBASIC20.9■□□□□ 0.94
NKX3-1Q99801 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NKX3-1Q99801 LINC01971-201ENST00000617888 1048 ntBASIC20.9■□□□□ 0.94
NKX3-1Q99801 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NKX3-1Q99801 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
NKX3-1Q99801 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.9■□□□□ 0.94
NKX3-1Q99801 AC022211.4-201ENST00000625094 2161 ntBASIC20.89■□□□□ 0.94
NKX3-1Q99801 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
NKX3-1Q99801 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX3-1Q99801 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.89■□□□□ 0.93
NKX3-1Q99801 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
NKX3-1Q99801 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
NKX3-1Q99801 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.89■□□□□ 0.93
NKX3-1Q99801 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
NKX3-1Q99801 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
NKX3-1Q99801 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NKX3-1Q99801 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.88■□□□□ 0.93
NKX3-1Q99801 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NKX3-1Q99801 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX3-1Q99801 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.88■□□□□ 0.93
NKX3-1Q99801 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX3-1Q99801 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
NKX3-1Q99801 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX3-1Q99801 DUX4L13-201ENST00000554103 1267 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L15-201ENST00000611059 1267 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L23-201ENST00000615195 1269 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L24-201ENST00000617576 1269 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L22-201ENST00000618238 1269 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L20-201ENST00000619712 1269 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L21-201ENST00000622058 1269 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L10-201ENST00000622460 1267 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 DUX4L25-201ENST00000624915 1269 ntBASIC20.87■□□□□ 0.93
NKX3-1Q99801 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX3-1Q99801 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
NKX3-1Q99801 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX3-1Q99801 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
NKX3-1Q99801 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.87■□□□□ 0.93
NKX3-1Q99801 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX3-1Q99801 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX3-1Q99801 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.86■□□□□ 0.93
NKX3-1Q99801 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.86■□□□□ 0.93
NKX3-1Q99801 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX3-1Q99801 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NKX3-1Q99801 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
NKX3-1Q99801 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX3-1Q99801 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NKX3-1Q99801 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX3-1Q99801 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NKX3-1Q99801 AC142381.3-201ENST00000568208 1670 ntBASIC20.84■□□□□ 0.93
NKX3-1Q99801 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.84■□□□□ 0.93
NKX3-1Q99801 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
NKX3-1Q99801 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NKX3-1Q99801 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NKX3-1Q99801 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX3-1Q99801 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
NKX3-1Q99801 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX3-1Q99801 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
NKX3-1Q99801 DUX4L11-201ENST00000611504 1267 ntBASIC20.83■□□□□ 0.93
NKX3-1Q99801 DUX4L12-201ENST00000614593 1267 ntBASIC20.83■□□□□ 0.93
NKX3-1Q99801 DUX4L14-201ENST00000621227 1267 ntBASIC20.83■□□□□ 0.93
NKX3-1Q99801 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.83■□□□□ 0.92
NKX3-1Q99801 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.83■□□□□ 0.92
NKX3-1Q99801 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.83■□□□□ 0.92
NKX3-1Q99801 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.82■□□□□ 0.92
NKX3-1Q99801 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX3-1Q99801 AL359258.2-201ENST00000564063 1566 ntBASIC20.82■□□□□ 0.92
NKX3-1Q99801 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX3-1Q99801 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.82■□□□□ 0.92
NKX3-1Q99801 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX3-1Q99801 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX3-1Q99801 AL359504.2-201ENST00000605506 1601 ntBASIC20.82■□□□□ 0.92
NKX3-1Q99801 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX3-1Q99801 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX3-1Q99801 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX3-1Q99801 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX3-1Q99801 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.81■□□□□ 0.92
NKX3-1Q99801 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX3-1Q99801 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX3-1Q99801 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
NKX3-1Q99801 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms