Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSMD3Q7Z407 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CSMD3Q7Z407 KRT16P3-201ENST00000439127 1283 ntBASIC17.14■□□□□ 0.33
CSMD3Q7Z407 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CSMD3Q7Z407 AC110285.6-201ENST00000617652 491 ntBASIC17.13■□□□□ 0.33
CSMD3Q7Z407 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSMD3Q7Z407 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC17.13■□□□□ 0.33
CSMD3Q7Z407 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSMD3Q7Z407 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CSMD3Q7Z407 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.13■□□□□ 0.33
CSMD3Q7Z407 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CSMD3Q7Z407 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSMD3Q7Z407 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CSMD3Q7Z407 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.12■□□□□ 0.33
CSMD3Q7Z407 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CSMD3Q7Z407 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC17.12■□□□□ 0.33
CSMD3Q7Z407 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CSMD3Q7Z407 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CSMD3Q7Z407 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 AC005837.3-201ENST00000612163 286 ntBASIC17.09■□□□□ 0.33
CSMD3Q7Z407 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 AC092666.2-201ENST00000613287 246 ntBASIC17.09■□□□□ 0.33
CSMD3Q7Z407 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.09■□□□□ 0.33
CSMD3Q7Z407 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC17.08■□□□□ 0.33
CSMD3Q7Z407 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CSMD3Q7Z407 BX664725.1-201ENST00000438252 379 ntBASIC17.08■□□□□ 0.33
CSMD3Q7Z407 AL117332.1-201ENST00000622628 974 ntBASIC17.08■□□□□ 0.33
CSMD3Q7Z407 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD3Q7Z407 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC17.08■□□□□ 0.32
CSMD3Q7Z407 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD3Q7Z407 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.08■□□□□ 0.32
CSMD3Q7Z407 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CSMD3Q7Z407 AL512631.2-201ENST00000604634 923 ntBASIC17.08■□□□□ 0.32
CSMD3Q7Z407 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC17.07■□□□□ 0.32
CSMD3Q7Z407 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD3Q7Z407 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.07■□□□□ 0.32
CSMD3Q7Z407 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD3Q7Z407 AL136116.3-201ENST00000402907 1138 ntBASIC17.07■□□□□ 0.32
CSMD3Q7Z407 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CSMD3Q7Z407 AC026271.2-201ENST00000428091 497 ntBASIC17.07■□□□□ 0.32
CSMD3Q7Z407 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CSMD3Q7Z407 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 ZNRF2P3-201ENST00000424200 374 ntBASIC17.06■□□□□ 0.32
CSMD3Q7Z407 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 AP002414.2-202ENST00000590929 1450 ntBASIC17.06■□□□□ 0.32
CSMD3Q7Z407 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CSMD3Q7Z407 AC021242.3-201ENST00000607598 1377 ntBASIC17.05■□□□□ 0.32
CSMD3Q7Z407 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 AC092028.1-203ENST00000608262 953 ntBASIC17.05■□□□□ 0.32
CSMD3Q7Z407 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CSMD3Q7Z407 AC137630.3-201ENST00000607245 391 ntBASIC17.05■□□□□ 0.32
CSMD3Q7Z407 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
CSMD3Q7Z407 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CSMD3Q7Z407 ABCB10P1-201ENST00000614297 2181 ntBASIC17.04■□□□□ 0.32
CSMD3Q7Z407 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC17.04■□□□□ 0.32
CSMD3Q7Z407 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC17.04■□□□□ 0.32
CSMD3Q7Z407 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CSMD3Q7Z407 AC096631.2-201ENST00000436136 790 ntBASIC17.04■□□□□ 0.32
CSMD3Q7Z407 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms