Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXA3O43365 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HOXA3O43365 AC103724.3-201ENST00000564481 992 ntBASIC19.47■□□□□ 0.71
HOXA3O43365 AL031848.2-201ENST00000607670 837 ntBASIC19.47■□□□□ 0.71
HOXA3O43365 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.47■□□□□ 0.71
HOXA3O43365 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
HOXA3O43365 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HOXA3O43365 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA3O43365 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA3O43365 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA3O43365 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA3O43365 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA3O43365 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA3O43365 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXA3O43365 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HOXA3O43365 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HOXA3O43365 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA3O43365 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA3O43365 RPS2P7-201ENST00000447334 885 ntBASIC19.45■□□□□ 0.7
HOXA3O43365 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXA3O43365 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA3O43365 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA3O43365 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA3O43365 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HOXA3O43365 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA3O43365 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA3O43365 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA3O43365 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA3O43365 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXA3O43365 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXA3O43365 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HOXA3O43365 AC019171.1-201ENST00000601251 1056 ntBASIC19.43■□□□□ 0.7
HOXA3O43365 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
HOXA3O43365 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HOXA3O43365 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA3O43365 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA3O43365 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA3O43365 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
HOXA3O43365 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA3O43365 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXA3O43365 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA3O43365 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HOXA3O43365 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA3O43365 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HOXA3O43365 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA3O43365 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA3O43365 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA3O43365 OR2A1-AS1-204ENST00000470435 602 ntBASIC19.41■□□□□ 0.7
HOXA3O43365 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA3O43365 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HOXA3O43365 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXA3O43365 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXA3O43365 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HOXA3O43365 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HOXA3O43365 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXA3O43365 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HOXA3O43365 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXA3O43365 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HOXA3O43365 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXA3O43365 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA3O43365 LONRF2P2-201ENST00000439212 571 ntBASIC19.39■□□□□ 0.69
HOXA3O43365 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA3O43365 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXA3O43365 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXA3O43365 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA3O43365 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA3O43365 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXA3O43365 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXA3O43365 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.38■□□□□ 0.69
HOXA3O43365 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HOXA3O43365 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXA3O43365 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA3O43365 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA3O43365 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HOXA3O43365 GUSBP5-201ENST00000418136 578 ntBASIC19.37■□□□□ 0.69
HOXA3O43365 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.37■□□□□ 0.69
HOXA3O43365 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.37■□□□□ 0.69
HOXA3O43365 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.37■□□□□ 0.69
HOXA3O43365 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HOXA3O43365 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HOXA3O43365 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HOXA3O43365 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA3O43365 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
HOXA3O43365 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA3O43365 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXA3O43365 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXA3O43365 KRT18P10-201ENST00000388836 1287 ntBASIC19.36■□□□□ 0.69
HOXA3O43365 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 531.6 ms