Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 AC026202.3-201ENST00000600805 1127 ntBASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 AC009831.1-201ENST00000580420 1582 ntBASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.91■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 RAP2CP1-202ENST00000605179 643 ntBASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.89■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.89■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 AC145676.1-201ENST00000514988 2004 ntBASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.88■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 U85056.1-201ENST00000616429 682 ntBASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 AC133552.2-201ENST00000619106 1032 ntBASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 DUSP8P4-201ENST00000399538 1761 ntBASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AC010501.1-201ENST00000606270 1962 ntBASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AC096887.2-201ENST00000623443 1957 ntBASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AL592293.1-201ENST00000502889 1188 ntBASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ABHD17AP5-201ENST00000580133 923 ntBASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.76■■□□□ 1.87
NPHP3-ACAD11A0A0J9YXS1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms