Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.95■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.94■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 AC026202.3-201ENST00000600805 1127 ntBASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 AC009831.1-201ENST00000580420 1582 ntBASIC26.92■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC26.91■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 RAP2CP1-202ENST00000605179 643 ntBASIC26.9■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.89■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.89■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
NPHP3-ACAD11A0A0J9YXS1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 AC145676.1-201ENST00000514988 2004 ntBASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 GFER-205ENST00000569451 517 ntTSL 5 BASIC26.88■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 U85056.1-201ENST00000616429 682 ntBASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 AC133552.2-201ENST00000619106 1032 ntBASIC26.87■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 DUSP8P4-201ENST00000399538 1761 ntBASIC26.86■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.83■■□□□ 1.89
NPHP3-ACAD11A0A0J9YXS1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AC010501.1-201ENST00000606270 1962 ntBASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AC096887.2-201ENST00000623443 1957 ntBASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AL592293.1-201ENST00000502889 1188 ntBASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ABHD17AP5-201ENST00000580133 923 ntBASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.8■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
NPHP3-ACAD11A0A0J9YXS1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC26.76■■□□□ 1.87
NPHP3-ACAD11A0A0J9YXS1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms