Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.63
RFC4P35249 ABCB10P3-201ENST00000561950 2166 ntBASIC31.45■■■□□ 2.63
RFC4P35249 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
RFC4P35249 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
RFC4P35249 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.44■■■□□ 2.62
RFC4P35249 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
RFC4P35249 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.44■■■□□ 2.62
RFC4P35249 AL359504.2-201ENST00000605506 1601 ntBASIC31.44■■■□□ 2.62
RFC4P35249 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
RFC4P35249 AP002414.2-202ENST00000590929 1450 ntBASIC31.44■■■□□ 2.62
RFC4P35249 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RFC4P35249 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
RFC4P35249 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
RFC4P35249 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
RFC4P35249 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.43■■■□□ 2.62
RFC4P35249 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
RFC4P35249 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
RFC4P35249 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
RFC4P35249 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
RFC4P35249 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RFC4P35249 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.41■■■□□ 2.62
RFC4P35249 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
RFC4P35249 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
RFC4P35249 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RFC4P35249 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
RFC4P35249 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.39■■■□□ 2.62
RFC4P35249 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.39■■■□□ 2.62
RFC4P35249 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
RFC4P35249 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.38■■■□□ 2.61
RFC4P35249 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RFC4P35249 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
RFC4P35249 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.38■■■□□ 2.61
RFC4P35249 RNF146-205ENST00000477776 762 ntTSL 3 BASIC31.37■■■□□ 2.61
RFC4P35249 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.37■■■□□ 2.61
RFC4P35249 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.37■■■□□ 2.61
RFC4P35249 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC31.37■■■□□ 2.61
RFC4P35249 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
RFC4P35249 AL139393.2-201ENST00000608721 2025 ntBASIC31.37■■■□□ 2.61
RFC4P35249 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
RFC4P35249 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.36■■■□□ 2.61
RFC4P35249 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.35■■■□□ 2.61
RFC4P35249 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
RFC4P35249 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
RFC4P35249 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC31.35■■■□□ 2.61
RFC4P35249 AC239859.2-201ENST00000444165 318 ntBASIC31.35■■■□□ 2.61
RFC4P35249 AC019171.1-201ENST00000601251 1056 ntBASIC31.35■■■□□ 2.61
RFC4P35249 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.34■■■□□ 2.61
RFC4P35249 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC31.34■■■□□ 2.61
RFC4P35249 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.33■■■□□ 2.61
RFC4P35249 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.33■■■□□ 2.61
RFC4P35249 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.32■■■□□ 2.6
RFC4P35249 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
RFC4P35249 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
RFC4P35249 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.31■■■□□ 2.6
RFC4P35249 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RFC4P35249 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RFC4P35249 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.3■■■□□ 2.6
RFC4P35249 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.3■■■□□ 2.6
RFC4P35249 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RFC4P35249 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
RFC4P35249 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.29■■■□□ 2.6
RFC4P35249 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RFC4P35249 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RFC4P35249 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
RFC4P35249 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC31.29■■■□□ 2.6
RFC4P35249 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
RFC4P35249 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC31.29■■■□□ 2.6
RFC4P35249 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
RFC4P35249 AC087393.1-201ENST00000582896 145 ntBASIC31.29■■■□□ 2.6
RFC4P35249 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RFC4P35249 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.28■■■□□ 2.6
RFC4P35249 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RFC4P35249 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
RFC4P35249 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RFC4P35249 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.27■■■□□ 2.6
RFC4P35249 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
RFC4P35249 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RFC4P35249 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RFC4P35249 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RFC4P35249 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
RFC4P35249 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.26■■■□□ 2.6
RFC4P35249 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.26■■■□□ 2.59
RFC4P35249 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RFC4P35249 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RFC4P35249 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC31.25■■■□□ 2.59
RFC4P35249 TK2-216ENST00000564917 1156 ntTSL 3 BASIC31.25■■■□□ 2.59
RFC4P35249 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.25■■■□□ 2.59
RFC4P35249 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RFC4P35249 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.25■■■□□ 2.59
RFC4P35249 Z92544.1-202ENST00000571933 1220 ntBASIC31.24■■■□□ 2.59
RFC4P35249 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC31.24■■■□□ 2.59
RFC4P35249 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RFC4P35249 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC31.23■■■□□ 2.59
RFC4P35249 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
RFC4P35249 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
RFC4P35249 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
RFC4P35249 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
RFC4P35249 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
RFC4P35249 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
RFC4P35249 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.21■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms