Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.7■■■□□ 2.67
COL5A3P25940 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.7■■■□□ 2.67
COL5A3P25940 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
COL5A3P25940 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.7■■■□□ 2.67
COL5A3P25940 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.7■■■□□ 2.67
COL5A3P25940 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
COL5A3P25940 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.7■■■□□ 2.66
COL5A3P25940 YBX1P4-201ENST00000392794 808 ntBASIC31.69■■■□□ 2.66
COL5A3P25940 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.69■■■□□ 2.66
COL5A3P25940 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
COL5A3P25940 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.69■■■□□ 2.66
COL5A3P25940 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL5A3P25940 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.68■■■□□ 2.66
COL5A3P25940 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
COL5A3P25940 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.67■■■□□ 2.66
COL5A3P25940 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
COL5A3P25940 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
COL5A3P25940 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.66■■■□□ 2.66
COL5A3P25940 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL5A3P25940 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.66■■■□□ 2.66
COL5A3P25940 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL5A3P25940 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.66■■■□□ 2.66
COL5A3P25940 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.65■■■□□ 2.66
COL5A3P25940 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
COL5A3P25940 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL5A3P25940 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
COL5A3P25940 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.64■■■□□ 2.66
COL5A3P25940 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
COL5A3P25940 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.64■■■□□ 2.66
COL5A3P25940 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.64■■■□□ 2.65
COL5A3P25940 WHAMMP3-201ENST00000611636 1609 ntBASIC31.63■■■□□ 2.65
COL5A3P25940 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.63■■■□□ 2.65
COL5A3P25940 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
COL5A3P25940 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
COL5A3P25940 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC31.62■■■□□ 2.65
COL5A3P25940 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
COL5A3P25940 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
COL5A3P25940 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
COL5A3P25940 THA1P-201ENST00000590384 1145 ntBASIC31.61■■■□□ 2.65
COL5A3P25940 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
COL5A3P25940 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC31.6■■■□□ 2.65
COL5A3P25940 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
COL5A3P25940 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.59■■■□□ 2.65
COL5A3P25940 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
COL5A3P25940 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
COL5A3P25940 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
COL5A3P25940 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
COL5A3P25940 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
COL5A3P25940 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
COL5A3P25940 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL5A3P25940 AL031848.2-201ENST00000607670 837 ntBASIC31.57■■■□□ 2.64
COL5A3P25940 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
COL5A3P25940 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC31.57■■■□□ 2.64
COL5A3P25940 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL5A3P25940 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL5A3P25940 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL5A3P25940 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
COL5A3P25940 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC31.56■■■□□ 2.64
COL5A3P25940 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.56■■■□□ 2.64
COL5A3P25940 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.55■■■□□ 2.64
COL5A3P25940 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.55■■■□□ 2.64
COL5A3P25940 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
COL5A3P25940 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.55■■■□□ 2.64
COL5A3P25940 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL5A3P25940 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
COL5A3P25940 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
COL5A3P25940 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.55■■■□□ 2.64
COL5A3P25940 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.55■■■□□ 2.64
COL5A3P25940 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL5A3P25940 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
COL5A3P25940 AC018755.3-202ENST00000596210 929 ntBASIC31.54■■■□□ 2.64
COL5A3P25940 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.54■■■□□ 2.64
COL5A3P25940 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL5A3P25940 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
COL5A3P25940 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL5A3P25940 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
COL5A3P25940 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL5A3P25940 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL5A3P25940 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
COL5A3P25940 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
COL5A3P25940 AC019171.1-201ENST00000601251 1056 ntBASIC31.52■■■□□ 2.64
COL5A3P25940 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC31.52■■■□□ 2.64
COL5A3P25940 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
COL5A3P25940 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL5A3P25940 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.51■■■□□ 2.63
COL5A3P25940 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC31.51■■■□□ 2.63
COL5A3P25940 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.5■■■□□ 2.63
COL5A3P25940 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
COL5A3P25940 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
COL5A3P25940 AL356441.2-201ENST00000443009 864 ntBASIC31.5■■■□□ 2.63
COL5A3P25940 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC31.5■■■□□ 2.63
COL5A3P25940 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.5■■■□□ 2.63
COL5A3P25940 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.5■■■□□ 2.63
COL5A3P25940 AC087393.1-201ENST00000582896 145 ntBASIC31.49■■■□□ 2.63
COL5A3P25940 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL5A3P25940 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL5A3P25940 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
COL5A3P25940 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.48■■■□□ 2.63
COL5A3P25940 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
COL5A3P25940 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.48■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms