Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LSM1O15116 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
LSM1O15116 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM1O15116 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
LSM1O15116 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LSM1O15116 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LSM1O15116 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LSM1O15116 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.79■□□□□ 0.44
LSM1O15116 AC116562.2-201ENST00000507042 360 ntBASIC17.79■□□□□ 0.44
LSM1O15116 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.79■□□□□ 0.44
LSM1O15116 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.79■□□□□ 0.44
LSM1O15116 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LSM1O15116 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LSM1O15116 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LSM1O15116 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 AP000593.1-201ENST00000393668 712 ntBASIC17.78■□□□□ 0.44
LSM1O15116 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 MFAP1P1-201ENST00000442257 1255 ntBASIC17.78■□□□□ 0.44
LSM1O15116 MCCD1P1-208ENST00000445732 328 ntBASIC17.78■□□□□ 0.44
LSM1O15116 FAM201B-201ENST00000458407 597 ntBASIC17.78■□□□□ 0.44
LSM1O15116 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.78■□□□□ 0.44
LSM1O15116 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.78■□□□□ 0.44
LSM1O15116 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.78■□□□□ 0.44
LSM1O15116 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LSM1O15116 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.78■□□□□ 0.44
LSM1O15116 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LSM1O15116 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
LSM1O15116 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 AC138028.4-201ENST00000564984 1845 ntBASIC17.77■□□□□ 0.44
LSM1O15116 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LSM1O15116 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.77■□□□□ 0.44
LSM1O15116 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.77■□□□□ 0.44
LSM1O15116 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.77■□□□□ 0.44
LSM1O15116 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.77■□□□□ 0.44
LSM1O15116 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LSM1O15116 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LSM1O15116 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.77■□□□□ 0.44
LSM1O15116 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.77■□□□□ 0.44
LSM1O15116 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.77■□□□□ 0.44
LSM1O15116 NUDT16P1-203ENST00000513809 620 ntBASIC17.77■□□□□ 0.44
LSM1O15116 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.77■□□□□ 0.44
LSM1O15116 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.77■□□□□ 0.44
LSM1O15116 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LSM1O15116 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms