Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.16■■□□□ 1.94
NKX2-4Q9H2Z4 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NKX2-4Q9H2Z4 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.16■■□□□ 1.94
NKX2-4Q9H2Z4 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
NKX2-4Q9H2Z4 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.15■■□□□ 1.94
NKX2-4Q9H2Z4 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.15■■□□□ 1.94
NKX2-4Q9H2Z4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NKX2-4Q9H2Z4 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC27.14■■□□□ 1.94
NKX2-4Q9H2Z4 PVT1_1.1-201ENST00000615125 194 ntBASIC27.14■■□□□ 1.94
NKX2-4Q9H2Z4 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC27.13■■□□□ 1.93
NKX2-4Q9H2Z4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC27.13■■□□□ 1.93
NKX2-4Q9H2Z4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NKX2-4Q9H2Z4 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.13■■□□□ 1.93
NKX2-4Q9H2Z4 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC27.13■■□□□ 1.93
NKX2-4Q9H2Z4 AL359258.2-201ENST00000564063 1566 ntBASIC27.13■■□□□ 1.93
NKX2-4Q9H2Z4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC27.12■■□□□ 1.93
NKX2-4Q9H2Z4 AC093536.1-201ENST00000569153 554 ntBASIC27.12■■□□□ 1.93
NKX2-4Q9H2Z4 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NKX2-4Q9H2Z4 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
NKX2-4Q9H2Z4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NKX2-4Q9H2Z4 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NKX2-4Q9H2Z4 AC025884.2-201ENST00000553429 711 ntBASIC27.11■■□□□ 1.93
NKX2-4Q9H2Z4 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NKX2-4Q9H2Z4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC27.1■■□□□ 1.93
NKX2-4Q9H2Z4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC27.1■■□□□ 1.93
NKX2-4Q9H2Z4 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
NKX2-4Q9H2Z4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.09■■□□□ 1.93
NKX2-4Q9H2Z4 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC27.09■■□□□ 1.93
NKX2-4Q9H2Z4 RAP2CP1-202ENST00000605179 643 ntBASIC27.09■■□□□ 1.93
NKX2-4Q9H2Z4 MIR6765-201ENST00000614092 87 ntBASIC27.09■■□□□ 1.93
NKX2-4Q9H2Z4 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC27.09■■□□□ 1.93
NKX2-4Q9H2Z4 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC27.09■■□□□ 1.93
NKX2-4Q9H2Z4 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 AL135925.1-201ENST00000605920 1701 ntBASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
NKX2-4Q9H2Z4 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
NKX2-4Q9H2Z4 AL356441.2-201ENST00000443009 864 ntBASIC27.07■■□□□ 1.92
NKX2-4Q9H2Z4 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.07■■□□□ 1.92
NKX2-4Q9H2Z4 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.07■■□□□ 1.92
NKX2-4Q9H2Z4 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-4Q9H2Z4 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC27.06■■□□□ 1.92
NKX2-4Q9H2Z4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
NKX2-4Q9H2Z4 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX2-4Q9H2Z4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
NKX2-4Q9H2Z4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
NKX2-4Q9H2Z4 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
NKX2-4Q9H2Z4 HYI-210ENST00000486909 905 ntTSL 5 BASIC27.04■■□□□ 1.92
NKX2-4Q9H2Z4 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC27.04■■□□□ 1.92
NKX2-4Q9H2Z4 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC27.04■■□□□ 1.92
NKX2-4Q9H2Z4 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC27.04■■□□□ 1.92
NKX2-4Q9H2Z4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC27.04■■□□□ 1.92
NKX2-4Q9H2Z4 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC27.03■■□□□ 1.92
NKX2-4Q9H2Z4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
NKX2-4Q9H2Z4 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
NKX2-4Q9H2Z4 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
NKX2-4Q9H2Z4 MIR4508-201ENST00000584178 70 ntBASIC27.01■■□□□ 1.91
NKX2-4Q9H2Z4 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.01■■□□□ 1.91
NKX2-4Q9H2Z4 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC27.01■■□□□ 1.91
NKX2-4Q9H2Z4 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC27.01■■□□□ 1.91
NKX2-4Q9H2Z4 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC27■■□□□ 1.91
NKX2-4Q9H2Z4 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC27■■□□□ 1.91
NKX2-4Q9H2Z4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
NKX2-4Q9H2Z4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC27■■□□□ 1.91
NKX2-4Q9H2Z4 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
NKX2-4Q9H2Z4 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC26.99■■□□□ 1.91
NKX2-4Q9H2Z4 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.99■■□□□ 1.91
NKX2-4Q9H2Z4 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
NKX2-4Q9H2Z4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.99■■□□□ 1.91
NKX2-4Q9H2Z4 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
NKX2-4Q9H2Z4 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC26.98■■□□□ 1.91
NKX2-4Q9H2Z4 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.98■■□□□ 1.91
NKX2-4Q9H2Z4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.98■■□□□ 1.91
NKX2-4Q9H2Z4 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
NKX2-4Q9H2Z4 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
NKX2-4Q9H2Z4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC26.97■■□□□ 1.91
NKX2-4Q9H2Z4 AC018755.3-202ENST00000596210 929 ntBASIC26.97■■□□□ 1.91
NKX2-4Q9H2Z4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC26.97■■□□□ 1.91
NKX2-4Q9H2Z4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.96■■□□□ 1.91
NKX2-4Q9H2Z4 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.96■■□□□ 1.91
NKX2-4Q9H2Z4 AC103724.3-201ENST00000564481 992 ntBASIC26.96■■□□□ 1.91
NKX2-4Q9H2Z4 AL031848.2-201ENST00000607670 837 ntBASIC26.96■■□□□ 1.91
NKX2-4Q9H2Z4 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.95■■□□□ 1.91
NKX2-4Q9H2Z4 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
NKX2-4Q9H2Z4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
NKX2-4Q9H2Z4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC26.95■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms