Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.63□□□□□ -0.552e-6■■□□□ 11.8
SUB1P53999 FAM83A-208ENST00000536633 3701 ntTSL 2 BASIC9.05□□□□□ -0.962e-6■■□□□ 11.8
SUB1P53999 PTBP1-206ENST00000585856 1217 ntTSL 219.39■□□□□ 0.696e-6■■□□□ 11.7
SUB1P53999 PTBP1-207ENST00000585932 1030 ntTSL 315.48■□□□□ 0.076e-6■■□□□ 11.7
SUB1P53999 PTBP1-210ENST00000586944 4661 ntTSL 215.1■□□□□ 0.016e-6■■□□□ 11.7
SUB1P53999 RPS13-206ENST00000528074 583 ntTSL 212.85□□□□□ -0.353e-19■■□□□ 11.7
SUB1P53999 RPS13-205ENST00000527571 777 ntTSL 212□□□□□ -0.493e-19■■□□□ 11.7
SUB1P53999 RPS13-210ENST00000534329 568 ntTSL 210.46□□□□□ -0.733e-19■■□□□ 11.7
SUB1P53999 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.327e-12■■□□□ 11.7
SUB1P53999 RPS5-203ENST00000596314 718 ntTSL 511.9□□□□□ -0.57e-12■■□□□ 11.7
SUB1P53999 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.527e-12■■□□□ 11.7
SUB1P53999 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.767e-12■■□□□ 11.7
SUB1P53999 RPS5-204ENST00000598098 536 ntTSL 2 BASIC9.65□□□□□ -0.867e-12■■□□□ 11.7
SUB1P53999 RPS5-205ENST00000598495 800 ntTSL 3 BASIC9.39□□□□□ -0.917e-12■■□□□ 11.7
SUB1P53999 FAM96A-204ENST00000558779 494 ntTSL 53.65□□□□□ -1.837e-7■■□□□ 11.7
SUB1P53999 PRRC2A-213ENST00000487839 1071 ntTSL 57.26□□□□□ -1.252e-10■■□□□ 11.6
SUB1P53999 PRRC2A-212ENST00000487089 732 ntTSL 26.27□□□□□ -1.412e-10■■□□□ 11.6
SUB1P53999 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.15■□□□□ 0.349e-7■■□□□ 11.6
SUB1P53999 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.29e-7■■□□□ 11.6
SUB1P53999 BCR-204ENST00000427791 771 ntTSL 1 (best)9.95□□□□□ -0.829e-7■■□□□ 11.6
SUB1P53999 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.315e-7■■□□□ 11.6
SUB1P53999 FLNA-206ENST00000420627 8225 ntTSL 512.15□□□□□ -0.465e-7■■□□□ 11.6
SUB1P53999 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.545e-7■■□□□ 11.6
SUB1P53999 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.615e-7■■□□□ 11.6
SUB1P53999 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC10.97□□□□□ -0.655e-7■■□□□ 11.6
SUB1P53999 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.33e-7■■□□□ 11.6
SUB1P53999 HSPA8-222ENST00000534319 1884 ntTSL 2 BASIC9.98□□□□□ -0.818e-7■■□□□ 11.6
SUB1P53999 HSPA8-215ENST00000532091 2301 ntTSL 58.41□□□□□ -1.068e-7■■□□□ 11.6
SUB1P53999 AC074091.1-201ENST00000505973 1741 ntTSL 2 BASIC9.03□□□□□ -0.962e-6■■□□□ 11.6
SUB1P53999 ZNF512-204ENST00000416005 3515 ntTSL 2 BASIC7.83□□□□□ -1.162e-6■■□□□ 11.6
SUB1P53999 ZNF512-202ENST00000379717 3417 ntAPPRIS ALT1 TSL 5 BASIC6.99□□□□□ -1.292e-6■■□□□ 11.6
SUB1P53999 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC6.85□□□□□ -1.312e-6■■□□□ 11.6
SUB1P53999 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC6.71□□□□□ -1.332e-6■■□□□ 11.6
SUB1P53999 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC6.64□□□□□ -1.352e-6■■□□□ 11.6
SUB1P53999 ZNF512-206ENST00000488055 2465 ntTSL 25.37□□□□□ -1.552e-6■■□□□ 11.6
SUB1P53999 PSMA5-206ENST00000538610 1504 ntTSL 1 (best) BASIC7.02□□□□□ -1.294e-7■■□□□ 11.6
SUB1P53999 MYL6-204ENST00000546630 544 ntTSL 1 (best)11.54□□□□□ -0.567e-7■■□□□ 11.6
SUB1P53999 MYL6B-203ENST00000548571 223 ntTSL 46.44□□□□□ -1.387e-7■■□□□ 11.6
SUB1P53999 TKT-204ENST00000450814 1941 ntTSL 214.09□□□□□ -0.151e-6■■□□□ 11.6
SUB1P53999 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.63□□□□□ -0.391e-6■■□□□ 11.6
SUB1P53999 TKT-210ENST00000469678 1871 ntTSL 512.08□□□□□ -0.481e-6■■□□□ 11.6
SUB1P53999 TKT-201ENST00000296289 1931 ntTSL 5 BASIC12.02□□□□□ -0.491e-6■■□□□ 11.6
SUB1P53999 TKT-206ENST00000460343 7286 ntTSL 210.63□□□□□ -0.711e-6■■□□□ 11.6
SUB1P53999 TKT-207ENST00000461139 1972 ntTSL 210.27□□□□□ -0.771e-6■■□□□ 11.6
SUB1P53999 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.831e-6■■□□□ 11.6
SUB1P53999 TKT-208ENST00000462138 3010 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.91e-6■■□□□ 11.6
SUB1P53999 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC10.98□□□□□ -0.652e-6■■□□□ 11.6
SUB1P53999 OSBPL9-207ENST00000462759 2755 ntTSL 1 (best) BASIC9.93□□□□□ -0.822e-6■■□□□ 11.6
SUB1P53999 OSBPL9-213ENST00000486942 2529 ntTSL 2 BASIC9.45□□□□□ -0.92e-6■■□□□ 11.6
SUB1P53999 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.432e-6■■□□□ 11.6
SUB1P53999 OSBPL9-210ENST00000475697 3375 ntTSL 25.81□□□□□ -1.482e-6■■□□□ 11.6
SUB1P53999 OSBPL9-215ENST00000495776 2831 ntTSL 25.33□□□□□ -1.562e-6■■□□□ 11.6
SUB1P53999 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.31□□□□□ -1.562e-6■■□□□ 11.6
SUB1P53999 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.572e-6■■□□□ 11.6
SUB1P53999 OSBPL9-206ENST00000453295 2842 ntTSL 1 (best) BASIC5.06□□□□□ -1.62e-6■■□□□ 11.6
SUB1P53999 OSBPL9-221ENST00000531819 4520 ntTSL 24.74□□□□□ -1.652e-6■■□□□ 11.6
SUB1P53999 OSBPL9-227ENST00000625138 863 ntTSL 53.58□□□□□ -1.842e-6■■□□□ 11.6
SUB1P53999 FASN-202ENST00000578424 951 ntTSL 213.57□□□□□ -0.242e-9■■□□□ 11.6
SUB1P53999 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.362e-6■■□□□ 11.6
SUB1P53999 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.521e-7■■□□□ 11.6
SUB1P53999 GORASP2-202ENST00000442798 1976 ntTSL 211.66□□□□□ -0.541e-7■■□□□ 11.6
SUB1P53999 GORASP2-207ENST00000486498 2096 ntTSL 210.37□□□□□ -0.751e-7■■□□□ 11.6
SUB1P53999 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.661e-12■■□□□ 11.6
SUB1P53999 PPP1CA-204ENST00000526510 1677 ntTSL 1 (best)15.72■□□□□ 0.111e-12■■□□□ 11.6
SUB1P53999 PPP1CA-208ENST00000532446 1465 ntTSL 514.07□□□□□ -0.161e-12■■□□□ 11.6
SUB1P53999 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC10.81□□□□□ -0.681e-12■■□□□ 11.6
SUB1P53999 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.28□□□□□ -0.444e-7■■□□□ 11.5
SUB1P53999 RTN3-206ENST00000377819 4937 ntTSL 1 (best) BASIC10.06□□□□□ -0.84e-7■■□□□ 11.5
SUB1P53999 RTN3-203ENST00000341307 2524 ntTSL 2 BASIC9□□□□□ -0.974e-7■■□□□ 11.5
SUB1P53999 RTN3-208ENST00000537981 2532 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.14e-7■■□□□ 11.5
SUB1P53999 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC7.69□□□□□ -1.184e-7■■□□□ 11.5
SUB1P53999 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC8.29□□□□□ -1.086e-7■■□□□ 11.5
SUB1P53999 PTP4A2-206ENST00000489313 1551 ntTSL 27.7□□□□□ -1.186e-7■■□□□ 11.5
SUB1P53999 PTP4A2-218ENST00000602725 3353 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.336e-7■■□□□ 11.5
SUB1P53999 PTP4A2-201ENST00000457805 1032 ntTSL 2 BASIC6.14□□□□□ -1.436e-7■■□□□ 11.5
SUB1P53999 PTP4A2-217ENST00000602683 667 ntTSL 24.16□□□□□ -1.746e-7■■□□□ 11.5
SUB1P53999 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.26□□□□□ -1.896e-7■■□□□ 11.5
SUB1P53999 ATP5O-204ENST00000429064 442 ntTSL 33.91□□□□□ -1.788e-7■■□□□ 11.5
SUB1P53999 ATP5O-202ENST00000417181 462 ntTSL 33.41□□□□□ -1.868e-7■■□□□ 11.5
SUB1P53999 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.415e-7■■□□□ 11.5
SUB1P53999 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.515e-7■■□□□ 11.5
SUB1P53999 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.732e-6■■□□□ 11.5
SUB1P53999 CRTAP-201ENST00000320954 6630 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.72e-6■■□□□ 11.5
SUB1P53999 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.232e-8■■□□□ 11.5
SUB1P53999 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.592e-8■■□□□ 11.5
SUB1P53999 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.085e-7■■□□□ 11.5
SUB1P53999 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.34e-13■■□□□ 11.5
SUB1P53999 STARD7-204ENST00000479456 2949 ntTSL 25.1□□□□□ -1.594e-13■■□□□ 11.5
SUB1P53999 ATP5O-203ENST00000418933 415 ntTSL 54.59□□□□□ -1.676e-7■■□□□ 11.4
SUB1P53999 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.373e-7■■□□□ 11.4
SUB1P53999 HBE1-201ENST00000292896 827 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.195e-28■■□□□ 11.4
SUB1P53999 LSM3-201ENST00000306024 3815 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.013e-9■■□□□ 11.4
SUB1P53999 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.246e-7■■□□□ 11.4
SUB1P53999 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.112e-11■■□□□ 11.4
SUB1P53999 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.87□□□□□ -0.192e-11■■□□□ 11.4
SUB1P53999 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.32e-11■■□□□ 11.4
SUB1P53999 RBM4-209ENST00000515838 943 ntTSL 211.12□□□□□ -0.632e-11■■□□□ 11.4
SUB1P53999 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.652e-11■■□□□ 11.4
SUB1P53999 RBM4-205ENST00000409406 2321 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.82e-11■■□□□ 11.4
SUB1P53999 RBM4-202ENST00000396053 1337 ntTSL 2 BASIC9.78□□□□□ -0.842e-11■■□□□ 11.4
Retrieved 100 of 11,644 protein–RNA pairs in 283.2 ms