Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM3Q53GG5 AC127502.1-201ENST00000399971 1502 ntBASIC20.58■□□□□ 0.88
PDLIM3Q53GG5 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM3Q53GG5 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM3Q53GG5 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM3Q53GG5 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.57■□□□□ 0.88
PDLIM3Q53GG5 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM3Q53GG5 RPS2-209ENST00000529806 993 ntTSL 3 BASIC20.57■□□□□ 0.88
PDLIM3Q53GG5 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.57■□□□□ 0.88
PDLIM3Q53GG5 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 ABHD17AP5-201ENST00000580133 923 ntBASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
PDLIM3Q53GG5 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 CR559946.2-201ENST00000623684 991 ntBASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM3Q53GG5 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 LINC01003-201ENST00000564834 1764 ntBASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PDLIM3Q53GG5 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM3Q53GG5 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM3Q53GG5 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PDLIM3Q53GG5 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM3Q53GG5 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.51■□□□□ 0.87
PDLIM3Q53GG5 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM3Q53GG5 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM3Q53GG5 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
PDLIM3Q53GG5 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 RARRES2P2-201ENST00000394842 485 ntBASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 DUX4L11-201ENST00000611504 1267 ntBASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 DUX4L12-201ENST00000614593 1267 ntBASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 DUX4L14-201ENST00000621227 1267 ntBASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM3Q53GG5 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDLIM3Q53GG5 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDLIM3Q53GG5 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.48■□□□□ 0.87
PDLIM3Q53GG5 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PDLIM3Q53GG5 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM3Q53GG5 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
PDLIM3Q53GG5 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDLIM3Q53GG5 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
PDLIM3Q53GG5 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
PDLIM3Q53GG5 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC20.46■□□□□ 0.87
PDLIM3Q53GG5 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
PDLIM3Q53GG5 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
PDLIM3Q53GG5 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
PDLIM3Q53GG5 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.44■□□□□ 0.86
PDLIM3Q53GG5 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
PDLIM3Q53GG5 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC20.43■□□□□ 0.86
PDLIM3Q53GG5 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.43■□□□□ 0.86
PDLIM3Q53GG5 LINC01971-201ENST00000617888 1048 ntBASIC20.43■□□□□ 0.86
PDLIM3Q53GG5 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
PDLIM3Q53GG5 AC100797.4-201ENST00000631653 1827 ntBASIC20.43■□□□□ 0.86
PDLIM3Q53GG5 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM3Q53GG5 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDLIM3Q53GG5 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms