Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC27.39■■□□□ 1.98
CHD9Q3L8U1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
CHD9Q3L8U1 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC27.39■■□□□ 1.97
CHD9Q3L8U1 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
CHD9Q3L8U1 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
CHD9Q3L8U1 HES6-204ENST00000409182 863 ntTSL 2 BASIC27.38■■□□□ 1.97
CHD9Q3L8U1 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CHD9Q3L8U1 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC27.37■■□□□ 1.97
CHD9Q3L8U1 AC009299.2-201ENST00000482477 511 ntBASIC27.37■■□□□ 1.97
CHD9Q3L8U1 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC27.37■■□□□ 1.97
CHD9Q3L8U1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
CHD9Q3L8U1 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC27.36■■□□□ 1.97
CHD9Q3L8U1 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CHD9Q3L8U1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CHD9Q3L8U1 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC27.34■■□□□ 1.97
CHD9Q3L8U1 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC27.34■■□□□ 1.97
CHD9Q3L8U1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CHD9Q3L8U1 AL592293.1-201ENST00000502889 1188 ntBASIC27.34■■□□□ 1.97
CHD9Q3L8U1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC27.34■■□□□ 1.97
CHD9Q3L8U1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
CHD9Q3L8U1 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CHD9Q3L8U1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC27.33■■□□□ 1.97
CHD9Q3L8U1 AC133552.2-201ENST00000619106 1032 ntBASIC27.32■■□□□ 1.96
CHD9Q3L8U1 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CHD9Q3L8U1 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
CHD9Q3L8U1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CHD9Q3L8U1 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.31■■□□□ 1.96
CHD9Q3L8U1 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
CHD9Q3L8U1 THA1P-201ENST00000590384 1145 ntBASIC27.3■■□□□ 1.96
CHD9Q3L8U1 KRT8P33-201ENST00000508125 1423 ntBASIC27.29■■□□□ 1.96
CHD9Q3L8U1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
CHD9Q3L8U1 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
CHD9Q3L8U1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
CHD9Q3L8U1 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC27.28■■□□□ 1.96
CHD9Q3L8U1 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC27.27■■□□□ 1.96
CHD9Q3L8U1 MIR935-201ENST00000401179 91 ntBASIC27.27■■□□□ 1.96
CHD9Q3L8U1 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CHD9Q3L8U1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC27.27■■□□□ 1.96
CHD9Q3L8U1 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CHD9Q3L8U1 RAP2CP1-202ENST00000605179 643 ntBASIC27.27■■□□□ 1.96
CHD9Q3L8U1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC27.26■■□□□ 1.96
CHD9Q3L8U1 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
CHD9Q3L8U1 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CHD9Q3L8U1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
CHD9Q3L8U1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CHD9Q3L8U1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC27.25■■□□□ 1.95
CHD9Q3L8U1 AC026202.3-201ENST00000600805 1127 ntBASIC27.25■■□□□ 1.95
CHD9Q3L8U1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CHD9Q3L8U1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CHD9Q3L8U1 GUSBP5-201ENST00000418136 578 ntBASIC27.25■■□□□ 1.95
CHD9Q3L8U1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
CHD9Q3L8U1 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
CHD9Q3L8U1 BEX3-202ENST00000372634 753 ntTSL 2 BASIC27.24■■□□□ 1.95
CHD9Q3L8U1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC27.24■■□□□ 1.95
CHD9Q3L8U1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
CHD9Q3L8U1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
CHD9Q3L8U1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
CHD9Q3L8U1 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CHD9Q3L8U1 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
CHD9Q3L8U1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
CHD9Q3L8U1 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CHD9Q3L8U1 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CHD9Q3L8U1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
CHD9Q3L8U1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
CHD9Q3L8U1 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC27.22■■□□□ 1.95
CHD9Q3L8U1 AC103834.1-201ENST00000520383 144 ntBASIC27.22■■□□□ 1.95
CHD9Q3L8U1 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD9Q3L8U1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CHD9Q3L8U1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC27.21■■□□□ 1.95
CHD9Q3L8U1 RP9P-202ENST00000450133 1212 ntBASIC27.21■■□□□ 1.95
CHD9Q3L8U1 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CHD9Q3L8U1 AC025884.2-201ENST00000553429 711 ntBASIC27.2■■□□□ 1.95
CHD9Q3L8U1 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC27.2■■□□□ 1.95
CHD9Q3L8U1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CHD9Q3L8U1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CHD9Q3L8U1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CHD9Q3L8U1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.2■■□□□ 1.94
CHD9Q3L8U1 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
CHD9Q3L8U1 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.2■■□□□ 1.94
CHD9Q3L8U1 AC010980.1-201ENST00000587192 1142 ntBASIC27.19■■□□□ 1.94
CHD9Q3L8U1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CHD9Q3L8U1 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CHD9Q3L8U1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC27.18■■□□□ 1.94
CHD9Q3L8U1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CHD9Q3L8U1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CHD9Q3L8U1 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC27.16■■□□□ 1.94
CHD9Q3L8U1 REST-210ENST00000638187 1334 ntTSL 5 BASIC27.16■■□□□ 1.94
CHD9Q3L8U1 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC27.15■■□□□ 1.94
CHD9Q3L8U1 SPCS2P3-201ENST00000500401 656 ntBASIC27.15■■□□□ 1.94
CHD9Q3L8U1 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
CHD9Q3L8U1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
CHD9Q3L8U1 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC27.14■■□□□ 1.94
CHD9Q3L8U1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 338.6 ms