Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
BRCA1P38398 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.65■■■□□ 2.66
BRCA1P38398 AC131212.1-201ENST00000613771 668 ntBASIC31.65■■■□□ 2.66
BRCA1P38398 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.64■■■□□ 2.66
BRCA1P38398 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.64■■■□□ 2.66
BRCA1P38398 DUX4L18-201ENST00000553347 1267 ntBASIC31.64■■■□□ 2.66
BRCA1P38398 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.63■■■□□ 2.65
BRCA1P38398 DUX4L9-201ENST00000449051 1259 ntBASIC31.63■■■□□ 2.65
BRCA1P38398 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.63■■■□□ 2.65
BRCA1P38398 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
BRCA1P38398 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.62■■■□□ 2.65
BRCA1P38398 AC126177.7-201ENST00000547904 679 ntBASIC31.62■■■□□ 2.65
BRCA1P38398 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
BRCA1P38398 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
BRCA1P38398 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
BRCA1P38398 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
BRCA1P38398 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
BRCA1P38398 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRCA1P38398 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
BRCA1P38398 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
BRCA1P38398 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.59■■■□□ 2.65
BRCA1P38398 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.59■■■□□ 2.65
BRCA1P38398 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
BRCA1P38398 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.57■■■□□ 2.65
BRCA1P38398 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
BRCA1P38398 GUSBP5-201ENST00000418136 578 ntBASIC31.57■■■□□ 2.64
BRCA1P38398 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.57■■■□□ 2.64
BRCA1P38398 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.56■■■□□ 2.64
BRCA1P38398 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.56■■■□□ 2.64
BRCA1P38398 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.56■■■□□ 2.64
BRCA1P38398 AC025884.2-201ENST00000553429 711 ntBASIC31.55■■■□□ 2.64
BRCA1P38398 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
BRCA1P38398 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC31.54■■■□□ 2.64
BRCA1P38398 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
BRCA1P38398 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.53■■■□□ 2.64
BRCA1P38398 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
BRCA1P38398 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
BRCA1P38398 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.52■■■□□ 2.64
BRCA1P38398 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
BRCA1P38398 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.52■■■□□ 2.64
BRCA1P38398 SPCS2P3-201ENST00000500401 656 ntBASIC31.52■■■□□ 2.64
BRCA1P38398 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.51■■■□□ 2.63
BRCA1P38398 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.5■■■□□ 2.63
BRCA1P38398 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
BRCA1P38398 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC31.49■■■□□ 2.63
BRCA1P38398 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.49■■■□□ 2.63
BRCA1P38398 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
BRCA1P38398 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
BRCA1P38398 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
BRCA1P38398 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC31.48■■■□□ 2.63
BRCA1P38398 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
BRCA1P38398 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
BRCA1P38398 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
BRCA1P38398 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
BRCA1P38398 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.47■■■□□ 2.63
BRCA1P38398 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.47■■■□□ 2.63
BRCA1P38398 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
BRCA1P38398 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
BRCA1P38398 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.46■■■□□ 2.63
BRCA1P38398 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC31.46■■■□□ 2.63
BRCA1P38398 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
BRCA1P38398 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
BRCA1P38398 RAP2CP1-202ENST00000605179 643 ntBASIC31.45■■■□□ 2.63
BRCA1P38398 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 KRT8P33-201ENST00000508125 1423 ntBASIC31.44■■■□□ 2.62
BRCA1P38398 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC31.44■■■□□ 2.62
BRCA1P38398 THA1P-201ENST00000590384 1145 ntBASIC31.44■■■□□ 2.62
BRCA1P38398 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
BRCA1P38398 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
BRCA1P38398 AC026202.3-201ENST00000600805 1127 ntBASIC31.43■■■□□ 2.62
BRCA1P38398 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
BRCA1P38398 AC010980.1-201ENST00000587192 1142 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 PVT1_1.1-201ENST00000615125 194 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.42■■■□□ 2.62
BRCA1P38398 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.42■■■□□ 2.62
BRCA1P38398 AC093536.1-201ENST00000569153 554 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 MIR4508-201ENST00000584178 70 ntBASIC31.42■■■□□ 2.62
BRCA1P38398 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.42■■■□□ 2.62
BRCA1P38398 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.41■■■□□ 2.62
BRCA1P38398 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
BRCA1P38398 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
BRCA1P38398 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
BRCA1P38398 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
BRCA1P38398 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
BRCA1P38398 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
BRCA1P38398 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
BRCA1P38398 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
BRCA1P38398 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
BRCA1P38398 MEST-211ENST00000437945 1455 ntTSL 5 BASIC31.39■■■□□ 2.62
BRCA1P38398 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC31.39■■■□□ 2.62
BRCA1P38398 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
BRCA1P38398 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
BRCA1P38398 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
BRCA1P38398 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.37■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms