Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
MSX2P35548 AC145676.1-201ENST00000514988 2004 ntBASIC23.93■■□□□ 1.42
MSX2P35548 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSX2P35548 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC23.93■■□□□ 1.42
MSX2P35548 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
MSX2P35548 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
MSX2P35548 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSX2P35548 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
MSX2P35548 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.92■■□□□ 1.42
MSX2P35548 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC23.92■■□□□ 1.42
MSX2P35548 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSX2P35548 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
MSX2P35548 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
MSX2P35548 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSX2P35548 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
MSX2P35548 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
MSX2P35548 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.9■■□□□ 1.42
MSX2P35548 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.89■■□□□ 1.42
MSX2P35548 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
MSX2P35548 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.89■■□□□ 1.41
MSX2P35548 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
MSX2P35548 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.89■■□□□ 1.41
MSX2P35548 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
MSX2P35548 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
MSX2P35548 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSX2P35548 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.88■■□□□ 1.41
MSX2P35548 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
MSX2P35548 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.87■■□□□ 1.41
MSX2P35548 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
MSX2P35548 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.87■■□□□ 1.41
MSX2P35548 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
MSX2P35548 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.85■■□□□ 1.41
MSX2P35548 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
MSX2P35548 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.85■■□□□ 1.41
MSX2P35548 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.85■■□□□ 1.41
MSX2P35548 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSX2P35548 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC23.84■■□□□ 1.41
MSX2P35548 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
MSX2P35548 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
MSX2P35548 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.83■■□□□ 1.41
MSX2P35548 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSX2P35548 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.83■■□□□ 1.4
MSX2P35548 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.4
MSX2P35548 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
MSX2P35548 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
MSX2P35548 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
MSX2P35548 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSX2P35548 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
MSX2P35548 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.8■■□□□ 1.4
MSX2P35548 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
MSX2P35548 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSX2P35548 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.79■■□□□ 1.4
MSX2P35548 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.79■■□□□ 1.4
MSX2P35548 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.79■■□□□ 1.4
MSX2P35548 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSX2P35548 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.78■■□□□ 1.4
MSX2P35548 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSX2P35548 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSX2P35548 AC093323.1-202ENST00000635031 2045 ntBASIC23.78■■□□□ 1.4
MSX2P35548 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSX2P35548 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.78■■□□□ 1.4
MSX2P35548 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
MSX2P35548 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
MSX2P35548 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSX2P35548 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.77■■□□□ 1.4
MSX2P35548 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.77■■□□□ 1.4
MSX2P35548 AC018358.1-201ENST00000631079 1402 ntBASIC23.76■■□□□ 1.39
MSX2P35548 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSX2P35548 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC23.75■■□□□ 1.39
MSX2P35548 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSX2P35548 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.75■■□□□ 1.39
MSX2P35548 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSX2P35548 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
MSX2P35548 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
MSX2P35548 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSX2P35548 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSX2P35548 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.74■■□□□ 1.39
MSX2P35548 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSX2P35548 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSX2P35548 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.73■■□□□ 1.39
MSX2P35548 SETD8P1-201ENST00000623146 1180 ntBASIC23.73■■□□□ 1.39
MSX2P35548 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSX2P35548 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
MSX2P35548 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
MSX2P35548 AC092803.2-201ENST00000564287 1899 ntBASIC23.73■■□□□ 1.39
MSX2P35548 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSX2P35548 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
MSX2P35548 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
MSX2P35548 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
MSX2P35548 DUSP8P4-201ENST00000399538 1761 ntBASIC23.7■■□□□ 1.39
MSX2P35548 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms