Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SRRM4A7MD48 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SRRM4A7MD48 DUX4L29-201ENST00000425409 679 ntBASIC20.28■□□□□ 0.84
SRRM4A7MD48 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SRRM4A7MD48 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.28■□□□□ 0.84
SRRM4A7MD48 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SRRM4A7MD48 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SRRM4A7MD48 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
SRRM4A7MD48 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.26■□□□□ 0.83
SRRM4A7MD48 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SRRM4A7MD48 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.26■□□□□ 0.83
SRRM4A7MD48 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SRRM4A7MD48 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SRRM4A7MD48 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.25■□□□□ 0.83
SRRM4A7MD48 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SRRM4A7MD48 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
SRRM4A7MD48 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SRRM4A7MD48 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.24■□□□□ 0.83
SRRM4A7MD48 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SRRM4A7MD48 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.23■□□□□ 0.83
SRRM4A7MD48 AC110285.7-201ENST00000624417 1536 ntBASIC20.23■□□□□ 0.83
SRRM4A7MD48 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SRRM4A7MD48 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
SRRM4A7MD48 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SRRM4A7MD48 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.22■□□□□ 0.83
SRRM4A7MD48 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.22■□□□□ 0.83
SRRM4A7MD48 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SRRM4A7MD48 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SRRM4A7MD48 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.21■□□□□ 0.83
SRRM4A7MD48 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SRRM4A7MD48 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SRRM4A7MD48 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SRRM4A7MD48 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SRRM4A7MD48 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.2■□□□□ 0.82
SRRM4A7MD48 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SRRM4A7MD48 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SRRM4A7MD48 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
SRRM4A7MD48 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SRRM4A7MD48 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SRRM4A7MD48 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SRRM4A7MD48 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SRRM4A7MD48 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SRRM4A7MD48 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.18■□□□□ 0.82
SRRM4A7MD48 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.18■□□□□ 0.82
SRRM4A7MD48 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC20.18■□□□□ 0.82
SRRM4A7MD48 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SRRM4A7MD48 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SRRM4A7MD48 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SRRM4A7MD48 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SRRM4A7MD48 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SRRM4A7MD48 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.17■□□□□ 0.82
SRRM4A7MD48 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
SRRM4A7MD48 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SRRM4A7MD48 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SRRM4A7MD48 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.16■□□□□ 0.82
SRRM4A7MD48 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.16■□□□□ 0.82
SRRM4A7MD48 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SRRM4A7MD48 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SRRM4A7MD48 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.16■□□□□ 0.82
SRRM4A7MD48 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SRRM4A7MD48 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SRRM4A7MD48 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SRRM4A7MD48 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SRRM4A7MD48 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SRRM4A7MD48 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.14■□□□□ 0.81
SRRM4A7MD48 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SRRM4A7MD48 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.14■□□□□ 0.81
SRRM4A7MD48 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SRRM4A7MD48 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SRRM4A7MD48 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.13■□□□□ 0.81
SRRM4A7MD48 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SRRM4A7MD48 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
SRRM4A7MD48 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SRRM4A7MD48 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SRRM4A7MD48 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.12■□□□□ 0.81
SRRM4A7MD48 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.12■□□□□ 0.81
SRRM4A7MD48 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
SRRM4A7MD48 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.12■□□□□ 0.81
SRRM4A7MD48 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SRRM4A7MD48 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.11■□□□□ 0.81
SRRM4A7MD48 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SRRM4A7MD48 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SRRM4A7MD48 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC20.1■□□□□ 0.81
SRRM4A7MD48 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SRRM4A7MD48 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC20.1■□□□□ 0.81
SRRM4A7MD48 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SRRM4A7MD48 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SRRM4A7MD48 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.09■□□□□ 0.81
SRRM4A7MD48 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SRRM4A7MD48 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SRRM4A7MD48 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SRRM4A7MD48 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.09■□□□□ 0.81
SRRM4A7MD48 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms