RNA–Protein interactions for RNA: ENST00000641756.1

PHGDH-226, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,132 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-226ENST00000641756 NISCHQ9Y2I1 1504 aa38.84■■■■□ 3.81
PHGDH-226ENST00000641756 CCDC180Q9P1Z9 1646 aa33.43■■■□□ 2.94
PHGDH-226ENST00000641756 ZCCHC6Q5VYS8 1495 aaKnown RBP32.75■■■□□ 2.83
PHGDH-226ENST00000641756 SHROOM4Q9ULL8 1493 aa32.5■■■□□ 2.79
PHGDH-226ENST00000641756 DCAF8L2P0C7V8 631 aa32.23■■■□□ 2.75
PHGDH-226ENST00000641756 DCAF1Q9Y4B6 1507 aa31.94■■■□□ 2.7
PHGDH-226ENST00000641756 SUPT5HO00267 1087 aaKnown RBP31.55■■■□□ 2.64
PHGDH-226ENST00000641756 ABCC9O60706 1549 aa31.37■■■□□ 2.61
PHGDH-226ENST00000641756 MYO15BQ96JP2 1530 aa31.27■■■□□ 2.6
PHGDH-226ENST00000641756 SCRIBQ14160 1630 aa31.11■■■□□ 2.57
PHGDH-226ENST00000641756 NACADO15069 1562 aa31.02■■■□□ 2.56
PHGDH-226ENST00000641756 RB1CC1Q8TDY2 1594 aa30.64■■■□□ 2.5
PHGDH-226ENST00000641756 RSF1Q96T23 1441 aaPredicted RBP30.45■■■□□ 2.47
PHGDH-226ENST00000641756 CHIC1Q5VXU3 224 aa30.41■■■□□ 2.46
PHGDH-226ENST00000641756 CECR2Q9BXF3 1484 aa30.29■■■□□ 2.44
PHGDH-226ENST00000641756 UNC13AQ9UPW8 1703 aa30.17■■■□□ 2.42
PHGDH-226ENST00000641756 MROH2BQ7Z745 1585 aa30.14■■■□□ 2.42
PHGDH-226ENST00000641756 WIZO95785 1651 aa29.95■■■□□ 2.39
PHGDH-226ENST00000641756 BAZ1AQ9NRL2 1556 aaPredicted RBP29.91■■■□□ 2.38
PHGDH-226ENST00000641756 PABPN1Q86U42 306 aaKnown RBP eCLIP29.8■■■□□ 2.36
PHGDH-226ENST00000641756 BICRAQ9NZM4 1560 aa29.8■■■□□ 2.36
PHGDH-226ENST00000641756 SMARCA4P51532 1647 aa29.74■■■□□ 2.35
PHGDH-226ENST00000641756 TOP2AP11388 1531 aaKnown RBP29.52■■■□□ 2.32
PHGDH-226ENST00000641756 TRIM41Q8WV44 630 aa29.49■■■□□ 2.31
PHGDH-226ENST00000641756 LOC105371045A0A1W2PR82 267 aa29.42■■■□□ 2.3
PHGDH-226ENST00000641756 CCDC88BA6NC98 1476 aa29.33■■■□□ 2.29
PHGDH-226ENST00000641756 SMARCA2P51531 1590 aa29.32■■■□□ 2.28
PHGDH-226ENST00000641756 EIF4G1Q04637 1599 aaKnown RBP29.31■■■□□ 2.28
PHGDH-226ENST00000641756 PEG3Q9GZU2 1588 aa29.23■■■□□ 2.27
PHGDH-226ENST00000641756 FAM9AQ8IZU1 332 aaPredicted RBP29.16■■■□□ 2.26
PHGDH-226ENST00000641756 ATAD2BQ9ULI0 1458 aa29.11■■■□□ 2.25
PHGDH-226ENST00000641756 ABCC8Q09428 1581 aa29.02■■■□□ 2.24
PHGDH-226ENST00000641756 BAZ1BQ9UIG0 1483 aaKnown RBP29■■■□□ 2.23
PHGDH-226ENST00000641756 EHMT2Q96KQ7 1210 aa28.88■■■□□ 2.21
PHGDH-226ENST00000641756 PCGF6Q9BYE7 350 aa28.75■■■□□ 2.19
PHGDH-226ENST00000641756 NCAPD3P42695 1498 aa28.67■■■□□ 2.18
PHGDH-226ENST00000641756 HMGXB3Q12766 1538 aa28.65■■■□□ 2.18
PHGDH-226ENST00000641756 WRNQ14191 1432 aaPredicted RBP eCLIP28.63■■■□□ 2.17
PHGDH-226ENST00000641756 SOGA1O94964 1423 aa28.6■■■□□ 2.17
PHGDH-226ENST00000641756 SYNJ1O43426 1573 aa28.53■■■□□ 2.16
PHGDH-226ENST00000641756 RUSC2Q8N2Y8 1516 aa28.49■■■□□ 2.15
PHGDH-226ENST00000641756 EEA1Q15075 1411 aa28.42■■■□□ 2.14
PHGDH-226ENST00000641756 TRIM26Q12899 539 aaPredicted RBP28.41■■■□□ 2.14
PHGDH-226ENST00000641756 CSRNP3Q8WYN3 585 aa28.37■■■□□ 2.13
PHGDH-226ENST00000641756 HRCP23327 699 aa28.32■■■□□ 2.12
PHGDH-226ENST00000641756 CC2D2AQ9P2K1 1620 aa28.3■■■□□ 2.12
PHGDH-226ENST00000641756 TOP2BQ02880 1626 aa28.27■■■□□ 2.12
PHGDH-226ENST00000641756 CFTRP13569 1480 aa28.25■■■□□ 2.11
PHGDH-226ENST00000641756 BIVM-ERCC5R4GMW8 1640 aa28.2■■■□□ 2.1
PHGDH-226ENST00000641756 TNIKQ9UKE5 1360 aa28.2■■■□□ 2.1
PHGDH-226ENST00000641756 CEP162Q5TB80 1403 aa28.17■■■□□ 2.1
PHGDH-226ENST00000641756 GOLGA3Q08378 1498 aa28.17■■■□□ 2.1
PHGDH-226ENST00000641756 UBTFP17480 764 aaKnown RBP28.17■■■□□ 2.1
PHGDH-226ENST00000641756 CUX1P39880 1505 aa28.11■■■□□ 2.09
PHGDH-226ENST00000641756 PPARGC1BQ86YN6 1023 aaKnown RBP28.11■■■□□ 2.09
PHGDH-226ENST00000641756 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
PHGDH-226ENST00000641756 KIF21BO75037 1637 aa28.08■■■□□ 2.09
PHGDH-226ENST00000641756 PRDM2Q13029 1718 aa28.08■■■□□ 2.09
PHGDH-226ENST00000641756 CADPSQ9ULU8 1353 aa28.05■■■□□ 2.08
PHGDH-226ENST00000641756 RAPGEF2Q9Y4G8 1499 aa27.95■■■□□ 2.06
PHGDH-226ENST00000641756 KIF27Q86VH2 1401 aa27.81■■■□□ 2.04
PHGDH-226ENST00000641756 CLIP1P30622 1438 aa27.8■■■□□ 2.04
PHGDH-226ENST00000641756 TTBK1Q5TCY1 1321 aaPredicted RBP27.79■■■□□ 2.04
PHGDH-226ENST00000641756 PRXQ9BXM0 1461 aa27.78■■■□□ 2.04
PHGDH-226ENST00000641756 FANCD2Q9BXW9 1451 aa27.78■■■□□ 2.04
PHGDH-226ENST00000641756 NESP48681 1621 aa27.75■■■□□ 2.03
PHGDH-226ENST00000641756 ERICH3Q5RHP9 1530 aa27.74■■■□□ 2.03
PHGDH-226ENST00000641756 RANGAP1P46060 587 aaPredicted RBP27.73■■■□□ 2.03
PHGDH-226ENST00000641756 FGD5Q6ZNL6 1462 aa27.71■■■□□ 2.03
PHGDH-226ENST00000641756 CUX2O14529 1486 aa27.67■■■□□ 2.02
PHGDH-226ENST00000641756 DNAJC5BQ9UF47 199 aa27.64■■■□□ 2.02
PHGDH-226ENST00000641756 VPS8Q8N3P4 1428 aa27.6■■■□□ 2.01
PHGDH-226ENST00000641756 DNMBPQ6XZF7 1577 aa27.58■■■□□ 2.01
PHGDH-226ENST00000641756 LAMC3Q9Y6N6 1575 aa27.57■■■□□ 2
PHGDH-226ENST00000641756 IGF1RP08069 1367 aa27.55■■■□□ 2
PHGDH-226ENST00000641756 TOPBP1Q92547 1522 aa27.54■■■□□ 2
PHGDH-226ENST00000641756 ZEB1P37275 1124 aaPredicted RBP27.5■■□□□ 1.99
PHGDH-226ENST00000641756 RAD54L2Q9Y4B4 1467 aa27.48■■□□□ 1.99
PHGDH-226ENST00000641756 POLA1P09884 1462 aaPredicted RBP27.47■■□□□ 1.99
PHGDH-226ENST00000641756 ARAP1Q96P48 1450 aa27.45■■□□□ 1.98
PHGDH-226ENST00000641756 CARMIL1Q5VZK9 1371 aa27.43■■□□□ 1.98
PHGDH-226ENST00000641756 URB2Q14146 1524 aaKnown RBP27.41■■□□□ 1.98
PHGDH-226ENST00000641756 APLP2Q06481 763 aa27.41■■□□□ 1.98
PHGDH-226ENST00000641756 ABCA10Q8WWZ4 1543 aa27.39■■□□□ 1.98
PHGDH-226ENST00000641756 PDS5BQ9NTI5 1447 aa27.38■■□□□ 1.97
PHGDH-226ENST00000641756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.38■■□□□ 1.97
PHGDH-226ENST00000641756 KIF21AQ7Z4S6 1674 aa27.34■■□□□ 1.97
PHGDH-226ENST00000641756 ARHGAP35Q9NRY4 1499 aa27.32■■□□□ 1.96
PHGDH-226ENST00000641756 CCER1Q8TC90 406 aaPredicted RBP27.27■■□□□ 1.96
PHGDH-226ENST00000641756 WDR97A6NE52 1622 aa27.24■■□□□ 1.95
PHGDH-226ENST00000641756 TDRD9Q8NDG6 1382 aaKnown RBP27.17■■□□□ 1.94
PHGDH-226ENST00000641756 CUL7Q14999 1698 aa27.17■■□□□ 1.94
PHGDH-226ENST00000641756 KANK4Q5T7N3 995 aaPredicted RBP27.14■■□□□ 1.94
PHGDH-226ENST00000641756 HNRNPUL2Q1KMD3 747 aaKnown RBP27.13■■□□□ 1.93
PHGDH-226ENST00000641756 ABCA5Q8WWZ7 1642 aa27.13■■□□□ 1.93
PHGDH-226ENST00000641756 GAPVD1Q14C86 1478 aa27.08■■□□□ 1.93
PHGDH-226ENST00000641756 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
PHGDH-226ENST00000641756 P3H3Q8IVL6 736 aa27.04■■□□□ 1.92
PHGDH-226ENST00000641756 MRC2Q9UBG0 1479 aa27.02■■□□□ 1.92
PHGDH-226ENST00000641756 CTTNBP2Q8WZ74 1663 aa27.01■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms