RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 AEBP2Q6ZN18 517 aaPredicted RBP7.89□□□□□ -1.15
VPS35-212ENST00000640313 CHIC1Q5VXU3 224 aa7.38□□□□□ -1.23
VPS35-212ENST00000640313 SENP3Q9H4L4 574 aaPredicted RBP6.78□□□□□ -1.32
VPS35-212ENST00000640313 PHF23Q9BUL5 403 aaPredicted RBP6.66□□□□□ -1.34
VPS35-212ENST00000640313 FOXD1Q16676 465 aa6.34□□□□□ -1.39
VPS35-212ENST00000640313 POTEDQ86YR6 584 aa6.27□□□□□ -1.41
VPS35-212ENST00000640313 MSH5O43196 834 aa6.04□□□□□ -1.44
VPS35-212ENST00000640313 PIAS4Q8N2W9 510 aaPredicted RBP5.85□□□□□ -1.47
VPS35-212ENST00000640313 PPP6R1Q9UPN7 881 aa5.75□□□□□ -1.49
VPS35-212ENST00000640313 PLPPR3Q6T4P5 718 aa5.72□□□□□ -1.49
VPS35-212ENST00000640313 ADRA2BP18089 450 aa5.71□□□□□ -1.5
VPS35-212ENST00000640313 DMRT2Q9Y5R5 561 aa5.35□□□□□ -1.55
VPS35-212ENST00000640313 MAPK8IP2Q13387 824 aaPredicted RBP5.31□□□□□ -1.56
VPS35-212ENST00000640313 CACNB1Q02641 598 aaPredicted RBP5.29□□□□□ -1.56
VPS35-212ENST00000640313 SCAF1Q9H7N4 1312 aaKnown RBP5.25□□□□□ -1.57
VPS35-212ENST00000640313 RNF39Q9H2S5 420 aa5.13□□□□□ -1.59
VPS35-212ENST00000640313 DCAF8L1A6NGE4 600 aa5.08□□□□□ -1.6
VPS35-212ENST00000640313 HOXD11P31277 338 aaPredicted RBP5.07□□□□□ -1.6
VPS35-212ENST00000640313 C1QBPQ07021 282 aaKnown RBP5.06□□□□□ -1.6
VPS35-212ENST00000640313 DNAJC5BQ9UF47 199 aa4.99□□□□□ -1.61
VPS35-212ENST00000640313 PPP4R3CPQ6ZMV5 832 aa4.98□□□□□ -1.61
VPS35-212ENST00000640313 RNF216Q9NWF9 866 aaPredicted RBP4.97□□□□□ -1.61
VPS35-212ENST00000640313 CNKSR2Q8WXI2 1034 aa4.95□□□□□ -1.62
VPS35-212ENST00000640313 POTEHQ6S545 545 aa4.86□□□□□ -1.63
VPS35-212ENST00000640313 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.8□□□□□ -1.64
VPS35-212ENST00000640313 NCBP3Q53F19 620 aaKnown RBP4.73□□□□□ -1.65
VPS35-212ENST00000640313 DSG3P32926 999 aa4.72□□□□□ -1.65
VPS35-212ENST00000640313 U3KPZ7 1027 aaPredicted RBP4.68□□□□□ -1.66
VPS35-212ENST00000640313 CAPN15O75808 1086 aa4.66□□□□□ -1.66
VPS35-212ENST00000640313 SPINK5Q9NQ38 1064 aaPredicted RBP4.66□□□□□ -1.66
VPS35-212ENST00000640313 NPM3O75607 178 aaKnown RBP4.64□□□□□ -1.67
VPS35-212ENST00000640313 APLP2Q06481 763 aa4.55□□□□□ -1.68
VPS35-212ENST00000640313 ZNF219Q9P2Y4 722 aaPredicted RBP4.54□□□□□ -1.68
VPS35-212ENST00000640313 ABCB7O75027 752 aa4.52□□□□□ -1.69
VPS35-212ENST00000640313 TRHP20396 242 aaPredicted RBP4.52□□□□□ -1.69
VPS35-212ENST00000640313 RBM42Q9BTD8 480 aaKnown RBP4.51□□□□□ -1.69
VPS35-212ENST00000640313 SLC4A2P04920 1241 aa4.5□□□□□ -1.69
VPS35-212ENST00000640313 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.49□□□□□ -1.69
VPS35-212ENST00000640313 HNRNPUL2Q1KMD3 747 aaKnown RBP4.49□□□□□ -1.69
VPS35-212ENST00000640313 CHRDL2Q6WN34 429 aa4.49□□□□□ -1.69
VPS35-212ENST00000640313 SP7Q8TDD2 431 aaPredicted RBP4.45□□□□□ -1.7
VPS35-212ENST00000640313 SAMD1Q6SPF0 538 aaPredicted RBP4.44□□□□□ -1.7
VPS35-212ENST00000640313 POLA2Q14181 598 aa4.37□□□□□ -1.71
VPS35-212ENST00000640313 AKT1S1Q96B36 256 aa4.37□□□□□ -1.71
VPS35-212ENST00000640313 KCNA4P22459 653 aa4.33□□□□□ -1.72
VPS35-212ENST00000640313 PIP4P2Q8N4L2 257 aa4.33□□□□□ -1.72
VPS35-212ENST00000640313 HAX1O00165 279 aa4.31□□□□□ -1.72
VPS35-212ENST00000640313 MYCNP04198 464 aaPredicted RBP4.31□□□□□ -1.72
VPS35-212ENST00000640313 REM2Q8IYK8 340 aaPredicted RBP4.31□□□□□ -1.72
VPS35-212ENST00000640313 FXR2P51116 673 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS35-212ENST00000640313 ZBTB12Q9Y330 459 aaPredicted RBP4.29□□□□□ -1.72
VPS35-212ENST00000640313 PITPNM1O00562 1244 aa4.26□□□□□ -1.73
VPS35-212ENST00000640313 EVX2Q03828 476 aa4.24□□□□□ -1.73
VPS35-212ENST00000640313 OSCARQ8IYS5 282 aa4.22□□□□□ -1.73
VPS35-212ENST00000640313 ATF5Q9Y2D1 282 aaPredicted RBP4.2□□□□□ -1.74
VPS35-212ENST00000640313 LHX8Q68G74 356 aa4.17□□□□□ -1.74
VPS35-212ENST00000640313 C19orf67A6NJJ6 358 aa4.16□□□□□ -1.74
VPS35-212ENST00000640313 GABBR2O75899 941 aa4.15□□□□□ -1.75
VPS35-212ENST00000640313 SPDYE2BA6NHP3 402 aa4.14□□□□□ -1.75
VPS35-212ENST00000640313 SPDYE6P0CI01 402 aa4.14□□□□□ -1.75
VPS35-212ENST00000640313 PRKAR2AP13861 404 aaKnown RBP4.14□□□□□ -1.75
VPS35-212ENST00000640313 SPDYE2Q495Y8 402 aa4.14□□□□□ -1.75
VPS35-212ENST00000640313 FOXD4L1Q9NU39 408 aa4.13□□□□□ -1.75
VPS35-212ENST00000640313 SPDYE1Q8NFV5 336 aaPredicted RBP4.11□□□□□ -1.75
VPS35-212ENST00000640313 CLEC11AQ9Y240 323 aa4.08□□□□□ -1.76
VPS35-212ENST00000640313 FBLN2P98095 1184 aa4.07□□□□□ -1.76
VPS35-212ENST00000640313 ATXN8OSP0DMR3 200 aa4.06□□□□□ -1.76
VPS35-212ENST00000640313 CLCN6P51797 869 aa4.06□□□□□ -1.76
VPS35-212ENST00000640313 POTEIP0CG38 1075 aa4.05□□□□□ -1.76
VPS35-212ENST00000640313 SLC4A1APQ9BWU0 796 aaKnown RBP4.05□□□□□ -1.76
VPS35-212ENST00000640313 PLSCR2Q9NRY7 297 aa4.05□□□□□ -1.76
VPS35-212ENST00000640313 SSUH2Q9Y2M2 353 aa4.05□□□□□ -1.76
VPS35-212ENST00000640313 CHADLQ6NUI6 762 aa4.03□□□□□ -1.76
VPS35-212ENST00000640313 ZNF692Q9BU19 519 aaPredicted RBP4.03□□□□□ -1.76
VPS35-212ENST00000640313 PRR29P0C7W0 189 aa4.01□□□□□ -1.77
VPS35-212ENST00000640313 MKRN4PQ13434 485 aaPredicted RBP4.01□□□□□ -1.77
VPS35-212ENST00000640313 CD44P16070 742 aaKnown RBP3.99□□□□□ -1.77
VPS35-212ENST00000640313 ZBTB22O15209 634 aa3.98□□□□□ -1.77
VPS35-212ENST00000640313 FARP1Q9Y4F1 1045 aaPredicted RBP3.98□□□□□ -1.77
VPS35-212ENST00000640313 DCBLD2Q96PD2 775 aa3.97□□□□□ -1.77
VPS35-212ENST00000640313 PABPN1Q86U42 306 aaKnown RBP eCLIP3.95□□□□□ -1.78
VPS35-212ENST00000640313 ZNF579Q8NAF0 562 aaKnown RBP3.95□□□□□ -1.78
VPS35-212ENST00000640313 OTUD5Q96G74 571 aa3.95□□□□□ -1.78
VPS35-212ENST00000640313 PCDH10Q9P2E7 1040 aa3.93□□□□□ -1.78
VPS35-212ENST00000640313 POTEMA6NI47 508 aa3.92□□□□□ -1.78
VPS35-212ENST00000640313 POTEB2H3BUK9 544 aa3.91□□□□□ -1.78
VPS35-212ENST00000640313 POTEGQ6S5H5 508 aa3.91□□□□□ -1.78
VPS35-212ENST00000640313 ZRANB1Q9UGI0 708 aa3.9□□□□□ -1.79
VPS35-212ENST00000640313 GALR2O43603 387 aaPredicted RBP3.88□□□□□ -1.79
VPS35-212ENST00000640313 CREBZFQ9NS37 354 aa3.86□□□□□ -1.79
VPS35-212ENST00000640313 PELP1Q8IZL8 1130 aaKnown RBP3.84□□□□□ -1.79
VPS35-212ENST00000640313 STAG3Q9UJ98 1225 aa3.84□□□□□ -1.79
VPS35-212ENST00000640313 MAMSTRQ6ZN01 415 aa3.83□□□□□ -1.8
VPS35-212ENST00000640313 PAK3O75914 559 aaPredicted RBP3.82□□□□□ -1.8
VPS35-212ENST00000640313 POTEJP0CG39 1038 aa3.82□□□□□ -1.8
VPS35-212ENST00000640313 C7P10643 843 aa3.82□□□□□ -1.8
VPS35-212ENST00000640313 LCE2DQ5TA82 110 aaPredicted RBP3.82□□□□□ -1.8
VPS35-212ENST00000640313 ASTLQ6HA08 431 aaPredicted RBP3.82□□□□□ -1.8
VPS35-212ENST00000640313 SLC39A7Q92504 469 aa3.81□□□□□ -1.8
VPS35-212ENST00000640313 PHF12Q96QT6 1004 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms