RNA–Protein interactions for RNA: ENST00000639955.1

NECAP1-221, Transcript of NECAP endocytosis associated 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NECAP1, Length 3,479 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-221ENST00000639955 NISCHQ9Y2I1 1504 aa14.99□□□□□ -0.01
NECAP1-221ENST00000639955 SHROOM4Q9ULL8 1493 aa13.74□□□□□ -0.21
NECAP1-221ENST00000639955 SUPT5HO00267 1087 aaKnown RBP13.55□□□□□ -0.24
NECAP1-221ENST00000639955 DCAF8L2P0C7V8 631 aa13.49□□□□□ -0.25
NECAP1-221ENST00000639955 EHMT2Q96KQ7 1210 aa12.88□□□□□ -0.35
NECAP1-221ENST00000639955 PCGF6Q9BYE7 350 aa12.88□□□□□ -0.35
NECAP1-221ENST00000639955 CHIC1Q5VXU3 224 aa12.8□□□□□ -0.36
NECAP1-221ENST00000639955 LOC105371045A0A1W2PR82 267 aa12.75□□□□□ -0.37
NECAP1-221ENST00000639955 MYO15BQ96JP2 1530 aa12.74□□□□□ -0.37
NECAP1-221ENST00000639955 PPARGC1BQ86YN6 1023 aaKnown RBP12.74□□□□□ -0.37
NECAP1-221ENST00000639955 FAM9AQ8IZU1 332 aaPredicted RBP12.67□□□□□ -0.38
NECAP1-221ENST00000639955 ZCCHC6Q5VYS8 1495 aaKnown RBP12.62□□□□□ -0.39
NECAP1-221ENST00000639955 HRCP23327 699 aa12.6□□□□□ -0.39
NECAP1-221ENST00000639955 TTBK1Q5TCY1 1321 aaPredicted RBP12.43□□□□□ -0.42
NECAP1-221ENST00000639955 TRIM41Q8WV44 630 aa12.36□□□□□ -0.43
NECAP1-221ENST00000639955 CCDC180Q9P1Z9 1646 aa12.35□□□□□ -0.43
NECAP1-221ENST00000639955 PELP1Q8IZL8 1130 aaKnown RBP12.3□□□□□ -0.44
NECAP1-221ENST00000639955 TRIM26Q12899 539 aaPredicted RBP12.24□□□□□ -0.45
NECAP1-221ENST00000639955 SCRIBQ14160 1630 aa12.21□□□□□ -0.45
NECAP1-221ENST00000639955 ABCC9O60706 1549 aa12.16□□□□□ -0.46
NECAP1-221ENST00000639955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.09□□□□□ -0.47
NECAP1-221ENST00000639955 DCAF1Q9Y4B6 1507 aa12.08□□□□□ -0.48
NECAP1-221ENST00000639955 RANGAP1P46060 587 aaPredicted RBP12.07□□□□□ -0.48
NECAP1-221ENST00000639955 RSF1Q96T23 1441 aaPredicted RBP12.05□□□□□ -0.48
NECAP1-221ENST00000639955 CCER1Q8TC90 406 aaPredicted RBP12.02□□□□□ -0.49
NECAP1-221ENST00000639955 RB1CC1Q8TDY2 1594 aa12.01□□□□□ -0.49
NECAP1-221ENST00000639955 CECR2Q9BXF3 1484 aa11.97□□□□□ -0.49
NECAP1-221ENST00000639955 MYT1Q01538 1121 aa11.97□□□□□ -0.49
NECAP1-221ENST00000639955 UBTFP17480 764 aaKnown RBP11.91□□□□□ -0.5
NECAP1-221ENST00000639955 PABPN1Q86U42 306 aaKnown RBP eCLIP11.89□□□□□ -0.51
NECAP1-221ENST00000639955 ZEB1P37275 1124 aaPredicted RBP11.89□□□□□ -0.51
NECAP1-221ENST00000639955 YTHDC1Q96MU7 727 aaKnown RBP11.86□□□□□ -0.51
NECAP1-221ENST00000639955 SCAF1Q9H7N4 1312 aaKnown RBP11.83□□□□□ -0.52
NECAP1-221ENST00000639955 MROH2BQ7Z745 1585 aa11.83□□□□□ -0.52
NECAP1-221ENST00000639955 HNRNPUL2Q1KMD3 747 aaKnown RBP11.8□□□□□ -0.52
NECAP1-221ENST00000639955 WIZO95785 1651 aa11.78□□□□□ -0.52
NECAP1-221ENST00000639955 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
NECAP1-221ENST00000639955 DIEXFQ68CQ4 756 aaKnown RBP11.72□□□□□ -0.53
NECAP1-221ENST00000639955 NEUROD1Q13562 356 aa11.7□□□□□ -0.54
NECAP1-221ENST00000639955 SOGA1O94964 1423 aa11.66□□□□□ -0.54
NECAP1-221ENST00000639955 CCDC88BA6NC98 1476 aa11.66□□□□□ -0.54
NECAP1-221ENST00000639955 GTF3C3Q9Y5Q9 886 aa11.65□□□□□ -0.54
NECAP1-221ENST00000639955 APLP2Q06481 763 aa11.62□□□□□ -0.55
NECAP1-221ENST00000639955 CSRNP3Q8WYN3 585 aa11.61□□□□□ -0.55
NECAP1-221ENST00000639955 RUSC2Q8N2Y8 1516 aa11.61□□□□□ -0.55
NECAP1-221ENST00000639955 ITGAEP38570 1179 aa11.61□□□□□ -0.55
NECAP1-221ENST00000639955 CEP162Q5TB80 1403 aa11.59□□□□□ -0.55
NECAP1-221ENST00000639955 ACIN1Q9UKV3 1341 aaKnown RBP11.59□□□□□ -0.55
NECAP1-221ENST00000639955 CENPBP07199 599 aaPredicted RBP11.56□□□□□ -0.56
NECAP1-221ENST00000639955 NACADO15069 1562 aa11.55□□□□□ -0.56
NECAP1-221ENST00000639955 BAZ1AQ9NRL2 1556 aaPredicted RBP11.49□□□□□ -0.57
NECAP1-221ENST00000639955 ATP1B4Q9UN42 357 aaPredicted RBP11.48□□□□□ -0.57
NECAP1-221ENST00000639955 MIER1Q8N108 512 aa11.48□□□□□ -0.57
NECAP1-221ENST00000639955 ZNF316A6NFI3 1004 aaPredicted RBP11.47□□□□□ -0.57
NECAP1-221ENST00000639955 WRNQ14191 1432 aaPredicted RBP eCLIP11.4□□□□□ -0.58
NECAP1-221ENST00000639955 PRKCSHP14314 528 aaPredicted RBP11.4□□□□□ -0.58
NECAP1-221ENST00000639955 TNIKQ9UKE5 1360 aa11.39□□□□□ -0.59
NECAP1-221ENST00000639955 SMARCA2P51531 1590 aa11.39□□□□□ -0.59
NECAP1-221ENST00000639955 TOP2AP11388 1531 aaKnown RBP11.38□□□□□ -0.59
NECAP1-221ENST00000639955 SMARCA4P51532 1647 aa11.38□□□□□ -0.59
NECAP1-221ENST00000639955 CLIP1P30622 1438 aa11.38□□□□□ -0.59
NECAP1-221ENST00000639955 BCL11AQ9H165 835 aa11.37□□□□□ -0.59
NECAP1-221ENST00000639955 P3H3Q8IVL6 736 aa11.36□□□□□ -0.59
NECAP1-221ENST00000639955 GOLGA3Q08378 1498 aa11.35□□□□□ -0.59
NECAP1-221ENST00000639955 KANK4Q5T7N3 995 aaPredicted RBP11.31□□□□□ -0.6
NECAP1-221ENST00000639955 HIRIP3Q9BW71 556 aaPredicted RBP11.3□□□□□ -0.6
NECAP1-221ENST00000639955 RAPGEF2Q9Y4G8 1499 aa11.3□□□□□ -0.6
NECAP1-221ENST00000639955 BCANQ96GW7 911 aa11.29□□□□□ -0.6
NECAP1-221ENST00000639955 EIF4G1Q04637 1599 aaKnown RBP11.28□□□□□ -0.6
NECAP1-221ENST00000639955 FAM50AQ14320 339 aaKnown RBP11.26□□□□□ -0.61
NECAP1-221ENST00000639955 SYNJ1O43426 1573 aa11.25□□□□□ -0.61
NECAP1-221ENST00000639955 BAZ1BQ9UIG0 1483 aaKnown RBP11.24□□□□□ -0.61
NECAP1-221ENST00000639955 CEP164Q9UPV0 1460 aa11.24□□□□□ -0.61
NECAP1-221ENST00000639955 UNC13AQ9UPW8 1703 aa11.24□□□□□ -0.61
NECAP1-221ENST00000639955 EEA1Q15075 1411 aa11.21□□□□□ -0.61
NECAP1-221ENST00000639955 KCNH8Q96L42 1107 aa11.21□□□□□ -0.62
NECAP1-221ENST00000639955 VPS8Q8N3P4 1428 aa11.2□□□□□ -0.62
NECAP1-221ENST00000639955 CNGB1Q14028 1251 aaPredicted RBP11.18□□□□□ -0.62
NECAP1-221ENST00000639955 ARID3CA6NKF2 412 aa11.18□□□□□ -0.62
NECAP1-221ENST00000639955 SIN3AQ96ST3 1273 aa11.16□□□□□ -0.62
NECAP1-221ENST00000639955 ATAD2BQ9ULI0 1458 aa11.15□□□□□ -0.62
NECAP1-221ENST00000639955 DDX10Q13206 875 aaKnown RBP11.15□□□□□ -0.62
NECAP1-221ENST00000639955 BICRAQ9NZM4 1560 aa11.13□□□□□ -0.63
NECAP1-221ENST00000639955 KIF21BO75037 1637 aa11.1□□□□□ -0.63
NECAP1-221ENST00000639955 TRIM52Q96A61 297 aa11.1□□□□□ -0.63
NECAP1-221ENST00000639955 DHX57Q6P158 1386 aaKnown RBP11.09□□□□□ -0.63
NECAP1-221ENST00000639955 ERICH6Q7L0X2 663 aa11.06□□□□□ -0.64
NECAP1-221ENST00000639955 ARAP1Q96P48 1450 aa11.05□□□□□ -0.64
NECAP1-221ENST00000639955 SUPT16HQ9Y5B9 1047 aaKnown RBP11.05□□□□□ -0.64
NECAP1-221ENST00000639955 SENP3-EIF4A1A0A087X0R7 540 aa11.03□□□□□ -0.64
NECAP1-221ENST00000639955 CCNB3Q8WWL7 1395 aa11.02□□□□□ -0.64
NECAP1-221ENST00000639955 FKBP8Q14318 412 aa11.02□□□□□ -0.65
NECAP1-221ENST00000639955 KIF27Q86VH2 1401 aa11.02□□□□□ -0.65
NECAP1-221ENST00000639955 CUX2O14529 1486 aa11.01□□□□□ -0.65
NECAP1-221ENST00000639955 IRX6P78412 446 aaPredicted RBP11.01□□□□□ -0.65
NECAP1-221ENST00000639955 RAB3GAP2Q9H2M9 1393 aa11.01□□□□□ -0.65
NECAP1-221ENST00000639955 CHIC2Q9UKJ5 165 aa11□□□□□ -0.65
NECAP1-221ENST00000639955 POLR3GLQ9BT43 218 aa10.99□□□□□ -0.65
NECAP1-221ENST00000639955 CUX1P39880 1505 aa10.95□□□□□ -0.66
NECAP1-221ENST00000639955 NEFLP07196 543 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms