RNA–Protein interactions for RNA: ENST00000639071.1

NECAP1-215, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 2,578 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-215ENST00000639071 NISCHQ9Y2I1 1504 aa18.75■□□□□ 0.59
NECAP1-215ENST00000639071 SHROOM4Q9ULL8 1493 aa16.48■□□□□ 0.23
NECAP1-215ENST00000639071 SUPT5HO00267 1087 aaKnown RBP16.24■□□□□ 0.19
NECAP1-215ENST00000639071 ZCCHC6Q5VYS8 1495 aaKnown RBP15.87■□□□□ 0.13
NECAP1-215ENST00000639071 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
NECAP1-215ENST00000639071 MYO15BQ96JP2 1530 aa15.78■□□□□ 0.12
NECAP1-215ENST00000639071 CCDC180Q9P1Z9 1646 aa15.75■□□□□ 0.11
NECAP1-215ENST00000639071 CHIC1Q5VXU3 224 aa15.74■□□□□ 0.11
NECAP1-215ENST00000639071 HRCP23327 699 aa15.61■□□□□ 0.09
NECAP1-215ENST00000639071 PCGF6Q9BYE7 350 aa15.6■□□□□ 0.09
NECAP1-215ENST00000639071 PPARGC1BQ86YN6 1023 aaKnown RBP15.45■□□□□ 0.06
NECAP1-215ENST00000639071 LOC105371045A0A1W2PR82 267 aa15.43■□□□□ 0.06
NECAP1-215ENST00000639071 DCAF1Q9Y4B6 1507 aa15.22■□□□□ 0.03
NECAP1-215ENST00000639071 TRIM26Q12899 539 aaPredicted RBP15.1■□□□□ 0.01
NECAP1-215ENST00000639071 EHMT2Q96KQ7 1210 aa15.07■□□□□ 0
NECAP1-215ENST00000639071 FAM9AQ8IZU1 332 aaPredicted RBP15.06■□□□□ 0
NECAP1-215ENST00000639071 ABCC9O60706 1549 aa15.03■□□□□ -0
NECAP1-215ENST00000639071 SCRIBQ14160 1630 aa15.02■□□□□ -0
NECAP1-215ENST00000639071 TRIM41Q8WV44 630 aa15□□□□□ -0.01
NECAP1-215ENST00000639071 RSF1Q96T23 1441 aaPredicted RBP14.98□□□□□ -0.01
NECAP1-215ENST00000639071 RB1CC1Q8TDY2 1594 aa14.91□□□□□ -0.02
NECAP1-215ENST00000639071 ZEB1P37275 1124 aaPredicted RBP14.77□□□□□ -0.04
NECAP1-215ENST00000639071 CECR2Q9BXF3 1484 aa14.74□□□□□ -0.05
NECAP1-215ENST00000639071 MROH2BQ7Z745 1585 aa14.67□□□□□ -0.06
NECAP1-215ENST00000639071 WIZO95785 1651 aa14.62□□□□□ -0.07
NECAP1-215ENST00000639071 NACADO15069 1562 aa14.61□□□□□ -0.07
NECAP1-215ENST00000639071 TTBK1Q5TCY1 1321 aaPredicted RBP14.61□□□□□ -0.07
NECAP1-215ENST00000639071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.61□□□□□ -0.07
NECAP1-215ENST00000639071 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
NECAP1-215ENST00000639071 CCER1Q8TC90 406 aaPredicted RBP14.54□□□□□ -0.08
NECAP1-215ENST00000639071 ABCC8Q09428 1581 aa14.43□□□□□ -0.1
NECAP1-215ENST00000639071 BAZ1AQ9NRL2 1556 aaPredicted RBP14.43□□□□□ -0.1
NECAP1-215ENST00000639071 CCDC88BA6NC98 1476 aa14.39□□□□□ -0.11
NECAP1-215ENST00000639071 EIF4G1Q04637 1599 aaKnown RBP14.38□□□□□ -0.11
NECAP1-215ENST00000639071 NEUROD1Q13562 356 aa14.35□□□□□ -0.11
NECAP1-215ENST00000639071 DIEXFQ68CQ4 756 aaKnown RBP14.33□□□□□ -0.11
NECAP1-215ENST00000639071 SOGA1O94964 1423 aa14.33□□□□□ -0.12
NECAP1-215ENST00000639071 PELP1Q8IZL8 1130 aaKnown RBP14.32□□□□□ -0.12
NECAP1-215ENST00000639071 ACIN1Q9UKV3 1341 aaKnown RBP14.32□□□□□ -0.12
NECAP1-215ENST00000639071 CEP162Q5TB80 1403 aa14.32□□□□□ -0.12
NECAP1-215ENST00000639071 UBTFP17480 764 aaKnown RBP14.3□□□□□ -0.12
NECAP1-215ENST00000639071 TOP2AP11388 1531 aaKnown RBP14.28□□□□□ -0.12
NECAP1-215ENST00000639071 RUSC2Q8N2Y8 1516 aa14.27□□□□□ -0.12
NECAP1-215ENST00000639071 SMARCA2P51531 1590 aa14.25□□□□□ -0.13
NECAP1-215ENST00000639071 GTF3C3Q9Y5Q9 886 aa14.25□□□□□ -0.13
NECAP1-215ENST00000639071 SMARCA4P51532 1647 aa14.24□□□□□ -0.13
NECAP1-215ENST00000639071 WRNQ14191 1432 aaPredicted RBP eCLIP14.23□□□□□ -0.13
NECAP1-215ENST00000639071 CSRNP3Q8WYN3 585 aa14.23□□□□□ -0.13
NECAP1-215ENST00000639071 TNIKQ9UKE5 1360 aa14.2□□□□□ -0.14
NECAP1-215ENST00000639071 CENPBP07199 599 aaPredicted RBP14.19□□□□□ -0.14
NECAP1-215ENST00000639071 PABPN1Q86U42 306 aaKnown RBP eCLIP14.19□□□□□ -0.14
NECAP1-215ENST00000639071 YTHDC1Q96MU7 727 aaKnown RBP14.18□□□□□ -0.14
NECAP1-215ENST00000639071 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
NECAP1-215ENST00000639071 RANGAP1P46060 587 aaPredicted RBP14.16□□□□□ -0.14
NECAP1-215ENST00000639071 UNC13AQ9UPW8 1703 aa14.14□□□□□ -0.15
NECAP1-215ENST00000639071 ZNF316A6NFI3 1004 aaPredicted RBP14.12□□□□□ -0.15
NECAP1-215ENST00000639071 GOLGA3Q08378 1498 aa14.1□□□□□ -0.15
NECAP1-215ENST00000639071 EEA1Q15075 1411 aa14.08□□□□□ -0.16
NECAP1-215ENST00000639071 MIER1Q8N108 512 aa14.03□□□□□ -0.16
NECAP1-215ENST00000639071 SYNJ1O43426 1573 aa14.01□□□□□ -0.17
NECAP1-215ENST00000639071 CLIP1P30622 1438 aa14□□□□□ -0.17
NECAP1-215ENST00000639071 APLP2Q06481 763 aa13.98□□□□□ -0.17
NECAP1-215ENST00000639071 CEP164Q9UPV0 1460 aa13.98□□□□□ -0.17
NECAP1-215ENST00000639071 BICRAQ9NZM4 1560 aa13.95□□□□□ -0.18
NECAP1-215ENST00000639071 RAPGEF2Q9Y4G8 1499 aa13.94□□□□□ -0.18
NECAP1-215ENST00000639071 VPS8Q8N3P4 1428 aa13.92□□□□□ -0.18
NECAP1-215ENST00000639071 KIF21BO75037 1637 aa13.91□□□□□ -0.18
NECAP1-215ENST00000639071 BAZ1BQ9UIG0 1483 aaKnown RBP13.85□□□□□ -0.19
NECAP1-215ENST00000639071 ATAD2BQ9ULI0 1458 aa13.85□□□□□ -0.19
NECAP1-215ENST00000639071 PEG3Q9GZU2 1588 aa13.84□□□□□ -0.19
NECAP1-215ENST00000639071 KANK4Q5T7N3 995 aaPredicted RBP13.8□□□□□ -0.2
NECAP1-215ENST00000639071 ITGAEP38570 1179 aa13.78□□□□□ -0.2
NECAP1-215ENST00000639071 DHX57Q6P158 1386 aaKnown RBP13.76□□□□□ -0.21
NECAP1-215ENST00000639071 TOP2BQ02880 1626 aa13.73□□□□□ -0.21
NECAP1-215ENST00000639071 ARAP1Q96P48 1450 aa13.73□□□□□ -0.21
NECAP1-215ENST00000639071 PRXQ9BXM0 1461 aa13.67□□□□□ -0.22
NECAP1-215ENST00000639071 BIVM-ERCC5R4GMW8 1640 aa13.65□□□□□ -0.22
NECAP1-215ENST00000639071 ERICH3Q5RHP9 1530 aa13.63□□□□□ -0.23
NECAP1-215ENST00000639071 CLSPNQ9HAW4 1339 aa13.63□□□□□ -0.23
NECAP1-215ENST00000639071 SUPT16HQ9Y5B9 1047 aaKnown RBP13.62□□□□□ -0.23
NECAP1-215ENST00000639071 CUX1P39880 1505 aa13.62□□□□□ -0.23
NECAP1-215ENST00000639071 KCNH8Q96L42 1107 aa13.61□□□□□ -0.23
NECAP1-215ENST00000639071 CCNB3Q8WWL7 1395 aa13.6□□□□□ -0.23
NECAP1-215ENST00000639071 KIF27Q86VH2 1401 aa13.6□□□□□ -0.23
NECAP1-215ENST00000639071 RRBP1Q9P2E9 1410 aaKnown RBP13.59□□□□□ -0.23
NECAP1-215ENST00000639071 MYT1Q01538 1121 aa13.59□□□□□ -0.23
NECAP1-215ENST00000639071 ARHGAP35Q9NRY4 1499 aa13.58□□□□□ -0.24
NECAP1-215ENST00000639071 RAB3GAP2Q9H2M9 1393 aa13.54□□□□□ -0.24
NECAP1-215ENST00000639071 ATP1B4Q9UN42 357 aaPredicted RBP13.54□□□□□ -0.24
NECAP1-215ENST00000639071 P3H3Q8IVL6 736 aa13.53□□□□□ -0.24
NECAP1-215ENST00000639071 FAM50AQ14320 339 aaKnown RBP13.52□□□□□ -0.25
NECAP1-215ENST00000639071 SIN3AQ96ST3 1273 aa13.51□□□□□ -0.25
NECAP1-215ENST00000639071 BCANQ96GW7 911 aa13.51□□□□□ -0.25
NECAP1-215ENST00000639071 HIRIP3Q9BW71 556 aaPredicted RBP13.5□□□□□ -0.25
NECAP1-215ENST00000639071 CUX2O14529 1486 aa13.49□□□□□ -0.25
NECAP1-215ENST00000639071 DDX10Q13206 875 aaKnown RBP13.49□□□□□ -0.25
NECAP1-215ENST00000639071 HMGXB3Q12766 1538 aa13.49□□□□□ -0.25
NECAP1-215ENST00000639071 MAPKBP1O60336 1514 aa13.47□□□□□ -0.25
NECAP1-215ENST00000639071 NCAPD3P42695 1498 aa13.47□□□□□ -0.25
NECAP1-215ENST00000639071 CFTRP13569 1480 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms