RNA–Protein interactions for RNA: ENST00000635392.1

SMARCA2-240, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 5

Gene SMARCA2, Length 291 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-240ENST00000635392 AEBP2Q6ZN18 517 aaPredicted RBP27.68■■■□□ 2.02
SMARCA2-240ENST00000635392 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
SMARCA2-240ENST00000635392 SENP3Q9H4L4 574 aaPredicted RBP23.56■■□□□ 1.36
SMARCA2-240ENST00000635392 PHF23Q9BUL5 403 aaPredicted RBP23.26■■□□□ 1.31
SMARCA2-240ENST00000635392 FOXD1Q16676 465 aa22.06■■□□□ 1.12
SMARCA2-240ENST00000635392 PLPPR3Q6T4P5 718 aa21.2■□□□□ 0.98
SMARCA2-240ENST00000635392 POTEDQ86YR6 584 aa20.72■□□□□ 0.91
SMARCA2-240ENST00000635392 MSH5O43196 834 aa20.68■□□□□ 0.9
SMARCA2-240ENST00000635392 PIAS4Q8N2W9 510 aaPredicted RBP20.52■□□□□ 0.88
SMARCA2-240ENST00000635392 PPP6R1Q9UPN7 881 aa20.44■□□□□ 0.86
SMARCA2-240ENST00000635392 ADRA2BP18089 450 aa20.35■□□□□ 0.85
SMARCA2-240ENST00000635392 KCNA4P22459 653 aa19.14■□□□□ 0.65
SMARCA2-240ENST00000635392 PPP4R3CPQ6ZMV5 832 aa18.81■□□□□ 0.6
SMARCA2-240ENST00000635392 MAPK8IP2Q13387 824 aaPredicted RBP18.79■□□□□ 0.6
SMARCA2-240ENST00000635392 DMRT2Q9Y5R5 561 aa18.67■□□□□ 0.58
SMARCA2-240ENST00000635392 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
SMARCA2-240ENST00000635392 EHMT2Q96KQ7 1210 aa18.48■□□□□ 0.55
SMARCA2-240ENST00000635392 NCBP3Q53F19 620 aaKnown RBP18.41■□□□□ 0.54
SMARCA2-240ENST00000635392 SLC4A1APQ9BWU0 796 aaKnown RBP18.28■□□□□ 0.52
SMARCA2-240ENST00000635392 NPM3O75607 178 aaKnown RBP18.25■□□□□ 0.51
SMARCA2-240ENST00000635392 CNKSR2Q8WXI2 1034 aa18.11■□□□□ 0.49
SMARCA2-240ENST00000635392 CSRNP3Q8WYN3 585 aa18.1■□□□□ 0.49
SMARCA2-240ENST00000635392 CACNB1Q02641 598 aaPredicted RBP17.94■□□□□ 0.46
SMARCA2-240ENST00000635392 DCAF8L1A6NGE4 600 aa17.92■□□□□ 0.46
SMARCA2-240ENST00000635392 HOXD11P31277 338 aaPredicted RBP17.87■□□□□ 0.45
SMARCA2-240ENST00000635392 DNAJC5BQ9UF47 199 aa17.72■□□□□ 0.43
SMARCA2-240ENST00000635392 ZBTB22O15209 634 aa17.7■□□□□ 0.42
SMARCA2-240ENST00000635392 RNF39Q9H2S5 420 aa17.65■□□□□ 0.42
SMARCA2-240ENST00000635392 RNF216Q9NWF9 866 aaPredicted RBP17.64■□□□□ 0.41
SMARCA2-240ENST00000635392 FOXD4L1Q9NU39 408 aa17.37■□□□□ 0.37
SMARCA2-240ENST00000635392 C1QBPQ07021 282 aaKnown RBP17.34■□□□□ 0.37
SMARCA2-240ENST00000635392 SLC4A2P04920 1241 aa17.14■□□□□ 0.33
SMARCA2-240ENST00000635392 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.01■□□□□ 0.31
SMARCA2-240ENST00000635392 MYCNP04198 464 aaPredicted RBP16.78■□□□□ 0.28
SMARCA2-240ENST00000635392 ATXN8OSP0DMR3 200 aa16.73■□□□□ 0.27
SMARCA2-240ENST00000635392 U3KPZ7 1027 aaPredicted RBP16.67■□□□□ 0.26
SMARCA2-240ENST00000635392 SPINK5Q9NQ38 1064 aaPredicted RBP16.53■□□□□ 0.24
SMARCA2-240ENST00000635392 CAPN15O75808 1086 aa16.47■□□□□ 0.23
SMARCA2-240ENST00000635392 DSG3P32926 999 aa16.45■□□□□ 0.22
SMARCA2-240ENST00000635392 ATF5Q9Y2D1 282 aaPredicted RBP16.41■□□□□ 0.22
SMARCA2-240ENST00000635392 SAMD1Q6SPF0 538 aaPredicted RBP16.27■□□□□ 0.2
SMARCA2-240ENST00000635392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.26■□□□□ 0.19
SMARCA2-240ENST00000635392 HNRNPUL2Q1KMD3 747 aaKnown RBP16.26■□□□□ 0.19
SMARCA2-240ENST00000635392 FKBP8Q14318 412 aa16.21■□□□□ 0.19
SMARCA2-240ENST00000635392 TRHP20396 242 aaPredicted RBP16.15■□□□□ 0.18
SMARCA2-240ENST00000635392 POTEHQ6S545 545 aa16.15■□□□□ 0.18
SMARCA2-240ENST00000635392 ABCB7O75027 752 aa16.1■□□□□ 0.17
SMARCA2-240ENST00000635392 APLP2Q06481 763 aa16.06■□□□□ 0.16
SMARCA2-240ENST00000635392 ZNF219Q9P2Y4 722 aaPredicted RBP16.06■□□□□ 0.16
SMARCA2-240ENST00000635392 RTN4Q9NQC3 1192 aaKnown RBP15.98■□□□□ 0.15
SMARCA2-240ENST00000635392 AMER1Q5JTC6 1135 aaPredicted RBP15.9■□□□□ 0.14
SMARCA2-240ENST00000635392 MKRN4PQ13434 485 aaPredicted RBP15.74■□□□□ 0.11
SMARCA2-240ENST00000635392 POLA2Q14181 598 aa15.64■□□□□ 0.09
SMARCA2-240ENST00000635392 RBM42Q9BTD8 480 aaKnown RBP15.64■□□□□ 0.09
SMARCA2-240ENST00000635392 SPDYE4A6NLX3 237 aa15.58■□□□□ 0.08
SMARCA2-240ENST00000635392 PROM2Q8N271 834 aa15.55■□□□□ 0.08
SMARCA2-240ENST00000635392 FBLN2P98095 1184 aa15.48■□□□□ 0.07
SMARCA2-240ENST00000635392 CHRDL2Q6WN34 429 aa15.45■□□□□ 0.06
SMARCA2-240ENST00000635392 SLC24A1O60721 1099 aa15.43■□□□□ 0.06
SMARCA2-240ENST00000635392 FBXO3Q9UK99 471 aa15.4■□□□□ 0.06
SMARCA2-240ENST00000635392 ZBTB12Q9Y330 459 aaPredicted RBP15.28■□□□□ 0.04
SMARCA2-240ENST00000635392 VASPP50552 380 aaPredicted RBP15.25■□□□□ 0.03
SMARCA2-240ENST00000635392 AKT1S1Q96B36 256 aa15.25■□□□□ 0.03
SMARCA2-240ENST00000635392 OSCARQ8IYS5 282 aa15.19■□□□□ 0.02
SMARCA2-240ENST00000635392 IFNLR1Q8IU57 520 aaPredicted RBP15.15■□□□□ 0.02
SMARCA2-240ENST00000635392 REM2Q8IYK8 340 aaPredicted RBP15.14■□□□□ 0.01
SMARCA2-240ENST00000635392 PIP4P2Q8N4L2 257 aa15.05■□□□□ -0
SMARCA2-240ENST00000635392 SP7Q8TDD2 431 aaPredicted RBP15.01□□□□□ -0.01
SMARCA2-240ENST00000635392 SSUH2Q9Y2M2 353 aa15.01□□□□□ -0.01
SMARCA2-240ENST00000635392 PITPNM1O00562 1244 aa15□□□□□ -0.01
SMARCA2-240ENST00000635392 ZNF692Q9BU19 519 aaPredicted RBP15□□□□□ -0.01
SMARCA2-240ENST00000635392 SPDYE2BA6NHP3 402 aa14.98□□□□□ -0.01
SMARCA2-240ENST00000635392 SPDYE6P0CI01 402 aa14.98□□□□□ -0.01
SMARCA2-240ENST00000635392 SPDYE2Q495Y8 402 aa14.98□□□□□ -0.01
SMARCA2-240ENST00000635392 PKD2Q13563 968 aa14.92□□□□□ -0.02
SMARCA2-240ENST00000635392 FXR2P51116 673 aaKnown RBP eCLIP14.9□□□□□ -0.02
SMARCA2-240ENST00000635392 STAG3Q9UJ98 1225 aa14.87□□□□□ -0.03
SMARCA2-240ENST00000635392 PABPN1Q86U42 306 aaKnown RBP eCLIP14.86□□□□□ -0.03
SMARCA2-240ENST00000635392 HAX1O00165 279 aa14.82□□□□□ -0.04
SMARCA2-240ENST00000635392 SPOCK2Q92563 424 aa14.78□□□□□ -0.04
SMARCA2-240ENST00000635392 KLHL34Q8N239 644 aa14.74□□□□□ -0.05
SMARCA2-240ENST00000635392 PLCB2Q00722 1185 aa14.73□□□□□ -0.05
SMARCA2-240ENST00000635392 EVX2Q03828 476 aa14.69□□□□□ -0.06
SMARCA2-240ENST00000635392 PLCD3Q8N3E9 789 aa14.68□□□□□ -0.06
SMARCA2-240ENST00000635392 MIER1Q8N108 512 aa14.66□□□□□ -0.06
SMARCA2-240ENST00000635392 DCAF8L2P0C7V8 631 aa14.6□□□□□ -0.07
SMARCA2-240ENST00000635392 CLEC11AQ9Y240 323 aa14.6□□□□□ -0.07
SMARCA2-240ENST00000635392 SPDYE1Q8NFV5 336 aaPredicted RBP14.59□□□□□ -0.07
SMARCA2-240ENST00000635392 ECM2O94769 699 aaPredicted RBP14.58□□□□□ -0.08
SMARCA2-240ENST00000635392 PRKAR2AP13861 404 aaKnown RBP14.58□□□□□ -0.08
SMARCA2-240ENST00000635392 NPM1P06748 294 aaKnown RBP eCLIP14.53□□□□□ -0.08
SMARCA2-240ENST00000635392 RGL2O15211 777 aa14.51□□□□□ -0.09
SMARCA2-240ENST00000635392 BBXQ8WY36 941 aaPredicted RBP14.45□□□□□ -0.1
SMARCA2-240ENST00000635392 ZBTB47Q9UFB7 747 aaPredicted RBP14.45□□□□□ -0.1
SMARCA2-240ENST00000635392 C19orf67A6NJJ6 358 aa14.44□□□□□ -0.1
SMARCA2-240ENST00000635392 HAP1P54257 671 aaPredicted RBP14.43□□□□□ -0.1
SMARCA2-240ENST00000635392 PLEKHG5O94827 1062 aa14.41□□□□□ -0.1
SMARCA2-240ENST00000635392 CHADLQ6NUI6 762 aa14.4□□□□□ -0.1
SMARCA2-240ENST00000635392 CIZ1Q9ULV3 898 aaPredicted RBP14.39□□□□□ -0.11
SMARCA2-240ENST00000635392 NUBP1P53384 320 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms