RNA–Protein interactions for RNA: ENST00000628646.2

SYNGAP1-207, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 4,264 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-207ENST00000628646 NISCHQ9Y2I1 1504 aa26.84■■□□□ 1.89
SYNGAP1-207ENST00000628646 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
SYNGAP1-207ENST00000628646 ABCC9O60706 1549 aa23.23■■□□□ 1.31
SYNGAP1-207ENST00000628646 CCDC180Q9P1Z9 1646 aa23.16■■□□□ 1.3
SYNGAP1-207ENST00000628646 SHROOM4Q9ULL8 1493 aa22.74■■□□□ 1.23
SYNGAP1-207ENST00000628646 ZCCHC6Q5VYS8 1495 aaKnown RBP22.32■■□□□ 1.16
SYNGAP1-207ENST00000628646 PABPN1Q86U42 306 aaKnown RBP eCLIP22.17■■□□□ 1.14
SYNGAP1-207ENST00000628646 RB1CC1Q8TDY2 1594 aa22.07■■□□□ 1.12
SYNGAP1-207ENST00000628646 NACADO15069 1562 aa22.01■■□□□ 1.11
SYNGAP1-207ENST00000628646 SUPT5HO00267 1087 aaKnown RBP21.98■■□□□ 1.11
SYNGAP1-207ENST00000628646 SCRIBQ14160 1630 aa21.89■■□□□ 1.1
SYNGAP1-207ENST00000628646 DCAF1Q9Y4B6 1507 aa21.81■■□□□ 1.08
SYNGAP1-207ENST00000628646 MYO15BQ96JP2 1530 aa21.63■■□□□ 1.05
SYNGAP1-207ENST00000628646 CECR2Q9BXF3 1484 aa21.03■□□□□ 0.96
SYNGAP1-207ENST00000628646 BICRAQ9NZM4 1560 aa20.9■□□□□ 0.94
SYNGAP1-207ENST00000628646 UNC13AQ9UPW8 1703 aa20.88■□□□□ 0.93
SYNGAP1-207ENST00000628646 BAZ1AQ9NRL2 1556 aaPredicted RBP20.86■□□□□ 0.93
SYNGAP1-207ENST00000628646 RSF1Q96T23 1441 aaPredicted RBP20.84■□□□□ 0.93
SYNGAP1-207ENST00000628646 MROH2BQ7Z745 1585 aa20.77■□□□□ 0.92
SYNGAP1-207ENST00000628646 BAZ1BQ9UIG0 1483 aaKnown RBP20.73■□□□□ 0.91
SYNGAP1-207ENST00000628646 EIF4G1Q04637 1599 aaKnown RBP20.68■□□□□ 0.9
SYNGAP1-207ENST00000628646 DNAJC5BQ9UF47 199 aa20.63■□□□□ 0.89
SYNGAP1-207ENST00000628646 SMARCA4P51532 1647 aa20.62■□□□□ 0.89
SYNGAP1-207ENST00000628646 CHIC1Q5VXU3 224 aa20.62■□□□□ 0.89
SYNGAP1-207ENST00000628646 SMARCA2P51531 1590 aa20.59■□□□□ 0.89
SYNGAP1-207ENST00000628646 ATAD2BQ9ULI0 1458 aa20.57■□□□□ 0.88
SYNGAP1-207ENST00000628646 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
SYNGAP1-207ENST00000628646 WIZO95785 1651 aa20.51■□□□□ 0.87
SYNGAP1-207ENST00000628646 EHMT2Q96KQ7 1210 aa20.51■□□□□ 0.87
SYNGAP1-207ENST00000628646 CC2D2AQ9P2K1 1620 aa20.5■□□□□ 0.87
SYNGAP1-207ENST00000628646 FAM9AQ8IZU1 332 aaPredicted RBP20.48■□□□□ 0.87
SYNGAP1-207ENST00000628646 NCAPD3P42695 1498 aa20.36■□□□□ 0.85
SYNGAP1-207ENST00000628646 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
SYNGAP1-207ENST00000628646 CCDC88BA6NC98 1476 aa20.27■□□□□ 0.83
SYNGAP1-207ENST00000628646 ERCC6Q03468 1493 aa20.24■□□□□ 0.83
SYNGAP1-207ENST00000628646 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
SYNGAP1-207ENST00000628646 HMGXB3Q12766 1538 aa20.13■□□□□ 0.81
SYNGAP1-207ENST00000628646 PDS5BQ9NTI5 1447 aa20.08■□□□□ 0.81
SYNGAP1-207ENST00000628646 RANGAP1P46060 587 aaPredicted RBP20.07■□□□□ 0.8
SYNGAP1-207ENST00000628646 PEG3Q9GZU2 1588 aa20.01■□□□□ 0.79
SYNGAP1-207ENST00000628646 NESP48681 1621 aa19.99■□□□□ 0.79
SYNGAP1-207ENST00000628646 UBTFP17480 764 aaKnown RBP19.99■□□□□ 0.79
SYNGAP1-207ENST00000628646 FBLN2P98095 1184 aa19.98■□□□□ 0.79
SYNGAP1-207ENST00000628646 WRNQ14191 1432 aaPredicted RBP eCLIP19.92■□□□□ 0.781e-7■■■■■ 66.8
SYNGAP1-207ENST00000628646 FANCD2Q9BXW9 1451 aa19.9■□□□□ 0.78
SYNGAP1-207ENST00000628646 LOC105371045A0A1W2PR82 267 aa19.9■□□□□ 0.78
SYNGAP1-207ENST00000628646 CEP164Q9UPV0 1460 aa19.88■□□□□ 0.77
SYNGAP1-207ENST00000628646 CFTRP13569 1480 aa19.83■□□□□ 0.76
SYNGAP1-207ENST00000628646 ABCC8Q09428 1581 aa19.79■□□□□ 0.76
SYNGAP1-207ENST00000628646 TTBK1Q5TCY1 1321 aaPredicted RBP19.79■□□□□ 0.76
SYNGAP1-207ENST00000628646 CSRNP3Q8WYN3 585 aa19.71■□□□□ 0.75
SYNGAP1-207ENST00000628646 ATP1B4Q9UN42 357 aaPredicted RBP19.71■□□□□ 0.75
SYNGAP1-207ENST00000628646 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
SYNGAP1-207ENST00000628646 SOGA1O94964 1423 aa19.66■□□□□ 0.74
SYNGAP1-207ENST00000628646 CHMP7Q8WUX9 453 aaPredicted RBP19.65■□□□□ 0.74
SYNGAP1-207ENST00000628646 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
SYNGAP1-207ENST00000628646 HRCP23327 699 aa19.62■□□□□ 0.73
SYNGAP1-207ENST00000628646 APLP2Q06481 763 aa19.6■□□□□ 0.73
SYNGAP1-207ENST00000628646 PCGF6Q9BYE7 350 aa19.6■□□□□ 0.73
SYNGAP1-207ENST00000628646 CUX2O14529 1486 aa19.59■□□□□ 0.73
SYNGAP1-207ENST00000628646 MRC2Q9UBG0 1479 aa19.59■□□□□ 0.73
SYNGAP1-207ENST00000628646 KIF27Q86VH2 1401 aa19.57■□□□□ 0.72
SYNGAP1-207ENST00000628646 FGD5Q6ZNL6 1462 aa19.52■□□□□ 0.71
SYNGAP1-207ENST00000628646 RAD54L2Q9Y4B4 1467 aa19.5■□□□□ 0.71
SYNGAP1-207ENST00000628646 TOPBP1Q92547 1522 aa19.48■□□□□ 0.71
SYNGAP1-207ENST00000628646 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.45■□□□□ 0.7
SYNGAP1-207ENST00000628646 HNRNPUL2Q1KMD3 747 aaKnown RBP19.45■□□□□ 0.7
SYNGAP1-207ENST00000628646 P3H3Q8IVL6 736 aa19.45■□□□□ 0.7
SYNGAP1-207ENST00000628646 CUX1P39880 1505 aa19.41■□□□□ 0.7
SYNGAP1-207ENST00000628646 URB2Q14146 1524 aaKnown RBP19.39■□□□□ 0.7
SYNGAP1-207ENST00000628646 AQRO60306 1485 aaKnown RBP eCLIP19.38■□□□□ 0.692e-6■■■■■ 32.4
SYNGAP1-207ENST00000628646 DNMBPQ6XZF7 1577 aa19.38■□□□□ 0.69
SYNGAP1-207ENST00000628646 POLA1P09884 1462 aaPredicted RBP19.37■□□□□ 0.69
SYNGAP1-207ENST00000628646 SYNJ1O43426 1573 aa19.37■□□□□ 0.69
SYNGAP1-207ENST00000628646 EEA1Q15075 1411 aa19.37■□□□□ 0.69
SYNGAP1-207ENST00000628646 TRIM26Q12899 539 aaPredicted RBP19.36■□□□□ 0.69
SYNGAP1-207ENST00000628646 CARMIL1Q5VZK9 1371 aa19.36■□□□□ 0.69
SYNGAP1-207ENST00000628646 KIF21AQ7Z4S6 1674 aa19.35■□□□□ 0.69
SYNGAP1-207ENST00000628646 IFT140Q96RY7 1462 aa19.31■□□□□ 0.68
SYNGAP1-207ENST00000628646 GAPVD1Q14C86 1478 aa19.3■□□□□ 0.68
SYNGAP1-207ENST00000628646 RUSC2Q8N2Y8 1516 aa19.28■□□□□ 0.68
SYNGAP1-207ENST00000628646 ARID3CA6NKF2 412 aa19.28■□□□□ 0.68
SYNGAP1-207ENST00000628646 TOP2BQ02880 1626 aa19.28■□□□□ 0.68
SYNGAP1-207ENST00000628646 PPARGC1BQ86YN6 1023 aaKnown RBP19.25■□□□□ 0.67
SYNGAP1-207ENST00000628646 OSCARQ8IYS5 282 aa19.19■□□□□ 0.66
SYNGAP1-207ENST00000628646 GOLGA3Q08378 1498 aa19.18■□□□□ 0.66
SYNGAP1-207ENST00000628646 IGF1RP08069 1367 aa19.18■□□□□ 0.66
SYNGAP1-207ENST00000628646 ZNF608Q9ULD9 1512 aaPredicted RBP19.18■□□□□ 0.66
SYNGAP1-207ENST00000628646 GRIN2BQ13224 1484 aa19.17■□□□□ 0.66
SYNGAP1-207ENST00000628646 PRDM2Q13029 1718 aa19.13■□□□□ 0.65
SYNGAP1-207ENST00000628646 WDR62O43379 1518 aa19.12■□□□□ 0.65
SYNGAP1-207ENST00000628646 ABCA10Q8WWZ4 1543 aa19.11■□□□□ 0.65
SYNGAP1-207ENST00000628646 RAPGEF2Q9Y4G8 1499 aa19.1■□□□□ 0.65
SYNGAP1-207ENST00000628646 NPM1P06748 294 aaKnown RBP eCLIP19.09■□□□□ 0.65
SYNGAP1-207ENST00000628646 SNAPC4Q5SXM2 1469 aa19.08■□□□□ 0.64
SYNGAP1-207ENST00000628646 BIVM-ERCC5R4GMW8 1640 aa19.06■□□□□ 0.64
SYNGAP1-207ENST00000628646 JPH4Q96JJ6 628 aa19.05■□□□□ 0.64
SYNGAP1-207ENST00000628646 FHAD1B1AJZ9 1412 aa19.05■□□□□ 0.64
SYNGAP1-207ENST00000628646 CLIP1P30622 1438 aa19.04■□□□□ 0.64
SYNGAP1-207ENST00000628646 TNIKQ9UKE5 1360 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms