RNA–Protein interactions for RNA: ENST00000624887.1

PCDHB11-202, Transcript of protocadherin beta 11, humanhuman

TSL 2 BASIC

Gene PCDHB11, Length 1,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-202ENST00000624887 NISCHQ9Y2I1 1504 aa42.98■■■■■ 4.47
PCDHB11-202ENST00000624887 CCDC180Q9P1Z9 1646 aa37.21■■■■□ 3.55
PCDHB11-202ENST00000624887 ZCCHC6Q5VYS8 1495 aaKnown RBP36.24■■■■□ 3.39
PCDHB11-202ENST00000624887 SHROOM4Q9ULL8 1493 aa35.66■■■■□ 3.3
PCDHB11-202ENST00000624887 DCAF1Q9Y4B6 1507 aa35.49■■■■□ 3.27
PCDHB11-202ENST00000624887 DCAF8L2P0C7V8 631 aa35.36■■■■□ 3.25
PCDHB11-202ENST00000624887 ABCC9O60706 1549 aa35.22■■■■□ 3.23
PCDHB11-202ENST00000624887 MYO15BQ96JP2 1530 aa34.91■■■■□ 3.18
PCDHB11-202ENST00000624887 NACADO15069 1562 aa34.69■■■■□ 3.14
PCDHB11-202ENST00000624887 SUPT5HO00267 1087 aaKnown RBP34.65■■■■□ 3.14
PCDHB11-202ENST00000624887 RB1CC1Q8TDY2 1594 aa34.38■■■■□ 3.09
PCDHB11-202ENST00000624887 SCRIBQ14160 1630 aa34.29■■■■□ 3.08
PCDHB11-202ENST00000624887 RSF1Q96T23 1441 aaPredicted RBP33.65■■■□□ 2.98
PCDHB11-202ENST00000624887 UNC13AQ9UPW8 1703 aa33.64■■■□□ 2.98
PCDHB11-202ENST00000624887 CHIC1Q5VXU3 224 aa33.53■■■□□ 2.96
PCDHB11-202ENST00000624887 CECR2Q9BXF3 1484 aa33.39■■■□□ 2.94
PCDHB11-202ENST00000624887 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
PCDHB11-202ENST00000624887 MROH2BQ7Z745 1585 aa33.27■■■□□ 2.92
PCDHB11-202ENST00000624887 PABPN1Q86U42 306 aaKnown RBP eCLIP33.24■■■□□ 2.91
PCDHB11-202ENST00000624887 BAZ1AQ9NRL2 1556 aaPredicted RBP33.12■■■□□ 2.89
PCDHB11-202ENST00000624887 WIZO95785 1651 aa33.04■■■□□ 2.88
PCDHB11-202ENST00000624887 SMARCA4P51532 1647 aa32.89■■■□□ 2.86
PCDHB11-202ENST00000624887 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
PCDHB11-202ENST00000624887 TRIM41Q8WV44 630 aa32.5■■■□□ 2.79
PCDHB11-202ENST00000624887 PEG3Q9GZU2 1588 aa32.44■■■□□ 2.78
PCDHB11-202ENST00000624887 EIF4G1Q04637 1599 aaKnown RBP32.43■■■□□ 2.78
PCDHB11-202ENST00000624887 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
PCDHB11-202ENST00000624887 CCDC88BA6NC98 1476 aa32.38■■■□□ 2.77
PCDHB11-202ENST00000624887 LOC105371045A0A1W2PR82 267 aa32.32■■■□□ 2.76
PCDHB11-202ENST00000624887 ATAD2BQ9ULI0 1458 aa32.31■■■□□ 2.76
PCDHB11-202ENST00000624887 BAZ1BQ9UIG0 1483 aaKnown RBP32.13■■■□□ 2.73
PCDHB11-202ENST00000624887 NCAPD3P42695 1498 aa32.04■■■□□ 2.72
PCDHB11-202ENST00000624887 HMGXB3Q12766 1538 aa31.97■■■□□ 2.71
PCDHB11-202ENST00000624887 FAM9AQ8IZU1 332 aaPredicted RBP31.97■■■□□ 2.71
PCDHB11-202ENST00000624887 ABCC8Q09428 1581 aa31.96■■■□□ 2.71
PCDHB11-202ENST00000624887 CC2D2AQ9P2K1 1620 aa31.86■■■□□ 2.69
PCDHB11-202ENST00000624887 WRNQ14191 1432 aaPredicted RBP eCLIP31.64■■■□□ 2.65
PCDHB11-202ENST00000624887 PCGF6Q9BYE7 350 aa31.58■■■□□ 2.65
PCDHB11-202ENST00000624887 EHMT2Q96KQ7 1210 aa31.53■■■□□ 2.64
PCDHB11-202ENST00000624887 EEA1Q15075 1411 aa31.52■■■□□ 2.64
PCDHB11-202ENST00000624887 SOGA1O94964 1423 aa31.51■■■□□ 2.64
PCDHB11-202ENST00000624887 SYNJ1O43426 1573 aa31.49■■■□□ 2.63
PCDHB11-202ENST00000624887 RUSC2Q8N2Y8 1516 aa31.36■■■□□ 2.61
PCDHB11-202ENST00000624887 TRIM26Q12899 539 aaPredicted RBP31.36■■■□□ 2.61
PCDHB11-202ENST00000624887 CSRNP3Q8WYN3 585 aa31.33■■■□□ 2.61
PCDHB11-202ENST00000624887 CFTRP13569 1480 aa31.33■■■□□ 2.61
PCDHB11-202ENST00000624887 TOP2BQ02880 1626 aa31.28■■■□□ 2.6
PCDHB11-202ENST00000624887 HRCP23327 699 aa31.23■■■□□ 2.59
PCDHB11-202ENST00000624887 BIVM-ERCC5R4GMW8 1640 aa31.23■■■□□ 2.59
PCDHB11-202ENST00000624887 CADPSQ9ULU8 1353 aa31.22■■■□□ 2.59
PCDHB11-202ENST00000624887 TNIKQ9UKE5 1360 aa31.19■■■□□ 2.58
PCDHB11-202ENST00000624887 GOLGA3Q08378 1498 aa31.14■■■□□ 2.58
PCDHB11-202ENST00000624887 PRDM2Q13029 1718 aa31.13■■■□□ 2.57
PCDHB11-202ENST00000624887 CEP162Q5TB80 1403 aa31.1■■■□□ 2.57
PCDHB11-202ENST00000624887 DNAJC5BQ9UF47 199 aa31.09■■■□□ 2.57
PCDHB11-202ENST00000624887 KIF21BO75037 1637 aa31.09■■■□□ 2.57
PCDHB11-202ENST00000624887 CEP164Q9UPV0 1460 aa31.07■■■□□ 2.56
PCDHB11-202ENST00000624887 CUX1P39880 1505 aa31.05■■■□□ 2.56
PCDHB11-202ENST00000624887 UBTFP17480 764 aaKnown RBP31.01■■■□□ 2.56
PCDHB11-202ENST00000624887 NESP48681 1621 aa30.93■■■□□ 2.54
PCDHB11-202ENST00000624887 LAMC3Q9Y6N6 1575 aa30.92■■■□□ 2.54
PCDHB11-202ENST00000624887 FANCD2Q9BXW9 1451 aa30.87■■■□□ 2.53
PCDHB11-202ENST00000624887 RAPGEF2Q9Y4G8 1499 aa30.83■■■□□ 2.53
PCDHB11-202ENST00000624887 KIF27Q86VH2 1401 aa30.76■■■□□ 2.51
PCDHB11-202ENST00000624887 PPARGC1BQ86YN6 1023 aaKnown RBP30.75■■■□□ 2.51
PCDHB11-202ENST00000624887 PRXQ9BXM0 1461 aa30.75■■■□□ 2.51
PCDHB11-202ENST00000624887 ERICH3Q5RHP9 1530 aa30.74■■■□□ 2.51
PCDHB11-202ENST00000624887 PDS5BQ9NTI5 1447 aa30.71■■■□□ 2.51
PCDHB11-202ENST00000624887 CLIP1P30622 1438 aa30.69■■■□□ 2.5
PCDHB11-202ENST00000624887 FGD5Q6ZNL6 1462 aa30.59■■■□□ 2.49
PCDHB11-202ENST00000624887 DNMBPQ6XZF7 1577 aa30.57■■■□□ 2.48
PCDHB11-202ENST00000624887 CUX2O14529 1486 aa30.54■■■□□ 2.48
PCDHB11-202ENST00000624887 TOPBP1Q92547 1522 aa30.53■■■□□ 2.48
PCDHB11-202ENST00000624887 VPS8Q8N3P4 1428 aa30.52■■■□□ 2.48
PCDHB11-202ENST00000624887 KIF21AQ7Z4S6 1674 aa30.51■■■□□ 2.47
PCDHB11-202ENST00000624887 URB2Q14146 1524 aaKnown RBP30.47■■■□□ 2.47
PCDHB11-202ENST00000624887 ZEB1P37275 1124 aaPredicted RBP30.45■■■□□ 2.46
PCDHB11-202ENST00000624887 IGF1RP08069 1367 aa30.44■■■□□ 2.46
PCDHB11-202ENST00000624887 POLA1P09884 1462 aaPredicted RBP30.39■■■□□ 2.46
PCDHB11-202ENST00000624887 TTBK1Q5TCY1 1321 aaPredicted RBP30.36■■■□□ 2.45
PCDHB11-202ENST00000624887 RANGAP1P46060 587 aaPredicted RBP30.34■■■□□ 2.45
PCDHB11-202ENST00000624887 ABCA10Q8WWZ4 1543 aa30.33■■■□□ 2.45
PCDHB11-202ENST00000624887 ARAP1Q96P48 1450 aa30.31■■■□□ 2.44
PCDHB11-202ENST00000624887 CARMIL1Q5VZK9 1371 aa30.3■■■□□ 2.44
PCDHB11-202ENST00000624887 MRC2Q9UBG0 1479 aa30.3■■■□□ 2.44
PCDHB11-202ENST00000624887 RAD54L2Q9Y4B4 1467 aa30.29■■■□□ 2.44
PCDHB11-202ENST00000624887 APLP2Q06481 763 aa30.23■■■□□ 2.43
PCDHB11-202ENST00000624887 ERCC6Q03468 1493 aa30.2■■■□□ 2.42
PCDHB11-202ENST00000624887 ARHGAP35Q9NRY4 1499 aa30.17■■■□□ 2.42
PCDHB11-202ENST00000624887 WDR97A6NE52 1622 aa30.15■■■□□ 2.42
PCDHB11-202ENST00000624887 WDR62O43379 1518 aa30.13■■■□□ 2.41
PCDHB11-202ENST00000624887 CUL7Q14999 1698 aa30.09■■■□□ 2.41
PCDHB11-202ENST00000624887 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.07■■■□□ 2.4
PCDHB11-202ENST00000624887 TARBP1Q13395 1621 aaKnown RBP30.06■■■□□ 2.4
PCDHB11-202ENST00000624887 THOC2Q8NI27 1593 aaKnown RBP30.02■■■□□ 2.4
PCDHB11-202ENST00000624887 ABCA5Q8WWZ7 1642 aa30.02■■■□□ 2.4
PCDHB11-202ENST00000624887 CCER1Q8TC90 406 aaPredicted RBP30.01■■■□□ 2.4
PCDHB11-202ENST00000624887 TDRD9Q8NDG6 1382 aaKnown RBP30.01■■■□□ 2.39
PCDHB11-202ENST00000624887 GAPVD1Q14C86 1478 aa29.96■■■□□ 2.39
PCDHB11-202ENST00000624887 IFT140Q96RY7 1462 aa29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 188.6 ms