RNA–Protein interactions for RNA: ENST00000619898.4

SPCS1-206, Transcript of signal peptidase complex subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPCS1, Length 4,254 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS1-206ENST00000619898 NISCHQ9Y2I1 1504 aa22.73■■□□□ 1.23
SPCS1-206ENST00000619898 DCAF8L2P0C7V8 631 aa21.15■□□□□ 0.98
SPCS1-206ENST00000619898 SUPT5HO00267 1087 aaKnown RBP20.92■□□□□ 0.94
SPCS1-206ENST00000619898 SHROOM4Q9ULL8 1493 aa20.87■□□□□ 0.93
SPCS1-206ENST00000619898 PCGF6Q9BYE7 350 aa19.99■□□□□ 0.79
SPCS1-206ENST00000619898 EHMT2Q96KQ7 1210 aa19.69■□□□□ 0.74
SPCS1-206ENST00000619898 CHIC1Q5VXU3 224 aa19.65■□□□□ 0.74
SPCS1-206ENST00000619898 HRCP23327 699 aa19.65■□□□□ 0.74
SPCS1-206ENST00000619898 FAM9AQ8IZU1 332 aaPredicted RBP19.52■□□□□ 0.72
SPCS1-206ENST00000619898 LOC105371045A0A1W2PR82 267 aa19.39■□□□□ 0.69
SPCS1-206ENST00000619898 TRIM41Q8WV44 630 aa19.34■□□□□ 0.69
SPCS1-206ENST00000619898 PPARGC1BQ86YN6 1023 aaKnown RBP19.34■□□□□ 0.69
SPCS1-206ENST00000619898 TRIM26Q12899 539 aaPredicted RBP19.26■□□□□ 0.67
SPCS1-206ENST00000619898 ZEB1P37275 1124 aaPredicted RBP19.25■□□□□ 0.67
SPCS1-206ENST00000619898 TTBK1Q5TCY1 1321 aaPredicted RBP19.09■□□□□ 0.65
SPCS1-206ENST00000619898 ZCCHC6Q5VYS8 1495 aaKnown RBP19.09■□□□□ 0.65
SPCS1-206ENST00000619898 CCER1Q8TC90 406 aaPredicted RBP18.99■□□□□ 0.63
SPCS1-206ENST00000619898 MYO15BQ96JP2 1530 aa18.95■□□□□ 0.62
SPCS1-206ENST00000619898 PELP1Q8IZL8 1130 aaKnown RBP18.83■□□□□ 0.61
SPCS1-206ENST00000619898 CENPBP07199 599 aaPredicted RBP18.79■□□□□ 0.6
SPCS1-206ENST00000619898 APLP2Q06481 763 aa18.75■□□□□ 0.59
SPCS1-206ENST00000619898 DCAF1Q9Y4B6 1507 aa18.74■□□□□ 0.59
SPCS1-206ENST00000619898 CCDC180Q9P1Z9 1646 aa18.72■□□□□ 0.59
SPCS1-206ENST00000619898 UBTFP17480 764 aaKnown RBP18.7■□□□□ 0.58
SPCS1-206ENST00000619898 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.63■□□□□ 0.57
SPCS1-206ENST00000619898 RANGAP1P46060 587 aaPredicted RBP18.6■□□□□ 0.57
SPCS1-206ENST00000619898 YTHDC1Q96MU7 727 aaKnown RBP18.54■□□□□ 0.56
SPCS1-206ENST00000619898 DIEXFQ68CQ4 756 aaKnown RBP18.43■□□□□ 0.54
SPCS1-206ENST00000619898 SCRIBQ14160 1630 aa18.36■□□□□ 0.53
SPCS1-206ENST00000619898 ABCC9O60706 1549 aa18.35■□□□□ 0.53
SPCS1-206ENST00000619898 HNRNPUL2Q1KMD3 747 aaKnown RBP18.35■□□□□ 0.53
SPCS1-206ENST00000619898 RSF1Q96T23 1441 aaPredicted RBP18.27■□□□□ 0.52
SPCS1-206ENST00000619898 GTF3C3Q9Y5Q9 886 aa18.24■□□□□ 0.51
SPCS1-206ENST00000619898 ACIN1Q9UKV3 1341 aaKnown RBP18.21■□□□□ 0.51
SPCS1-206ENST00000619898 SCAF1Q9H7N4 1312 aaKnown RBP18.19■□□□□ 0.5
SPCS1-206ENST00000619898 MYT1Q01538 1121 aa18.14■□□□□ 0.49
SPCS1-206ENST00000619898 ATP1B4Q9UN42 357 aaPredicted RBP18.11■□□□□ 0.49
SPCS1-206ENST00000619898 ZNF316A6NFI3 1004 aaPredicted RBP18.09■□□□□ 0.49
SPCS1-206ENST00000619898 CSRNP3Q8WYN3 585 aa18.07■□□□□ 0.48
SPCS1-206ENST00000619898 NEUROD1Q13562 356 aa18.06■□□□□ 0.48
SPCS1-206ENST00000619898 ITGAEP38570 1179 aa18.04■□□□□ 0.48
SPCS1-206ENST00000619898 PABPN1Q86U42 306 aaKnown RBP eCLIP18.02■□□□□ 0.48
SPCS1-206ENST00000619898 RB1CC1Q8TDY2 1594 aa17.95■□□□□ 0.46
SPCS1-206ENST00000619898 CECR2Q9BXF3 1484 aa17.88■□□□□ 0.45
SPCS1-206ENST00000619898 NEFLP07196 543 aa17.86■□□□□ 0.45
SPCS1-206ENST00000619898 CEP162Q5TB80 1403 aa17.81■□□□□ 0.44
SPCS1-206ENST00000619898 MIER1Q8N108 512 aa17.73■□□□□ 0.43
SPCS1-206ENST00000619898 MROH2BQ7Z745 1585 aa17.73■□□□□ 0.43
SPCS1-206ENST00000619898 NACADO15069 1562 aa17.71■□□□□ 0.43
SPCS1-206ENST00000619898 ERICH6Q7L0X2 663 aa17.68■□□□□ 0.42
SPCS1-206ENST00000619898 TNIKQ9UKE5 1360 aa17.68■□□□□ 0.42
SPCS1-206ENST00000619898 FAM50AQ14320 339 aaKnown RBP17.64■□□□□ 0.42
SPCS1-206ENST00000619898 EEA1Q15075 1411 aa17.63■□□□□ 0.41
SPCS1-206ENST00000619898 CLIP1P30622 1438 aa17.62■□□□□ 0.41
SPCS1-206ENST00000619898 GOLGA3Q08378 1498 aa17.61■□□□□ 0.41
SPCS1-206ENST00000619898 BCANQ96GW7 911 aa17.61■□□□□ 0.41
SPCS1-206ENST00000619898 SOGA1O94964 1423 aa17.61■□□□□ 0.41
SPCS1-206ENST00000619898 BAZ1AQ9NRL2 1556 aaPredicted RBP17.59■□□□□ 0.41
SPCS1-206ENST00000619898 ABCC8Q09428 1581 aa17.55■□□□□ 0.4
SPCS1-206ENST00000619898 WIZO95785 1651 aa17.55■□□□□ 0.4
SPCS1-206ENST00000619898 CCDC88BA6NC98 1476 aa17.55■□□□□ 0.4
SPCS1-206ENST00000619898 WRNQ14191 1432 aaPredicted RBP eCLIP17.54■□□□□ 0.4
SPCS1-206ENST00000619898 CEP164Q9UPV0 1460 aa17.45■□□□□ 0.38
SPCS1-206ENST00000619898 P3H3Q8IVL6 736 aa17.44■□□□□ 0.38
SPCS1-206ENST00000619898 CLSPNQ9HAW4 1339 aa17.43■□□□□ 0.38
SPCS1-206ENST00000619898 ANP32CO43423 234 aa17.43■□□□□ 0.38
SPCS1-206ENST00000619898 DDX10Q13206 875 aaKnown RBP17.38■□□□□ 0.37
SPCS1-206ENST00000619898 CNGB1Q14028 1251 aaPredicted RBP17.35■□□□□ 0.37
SPCS1-206ENST00000619898 FKBP8Q14318 412 aa17.34■□□□□ 0.37
SPCS1-206ENST00000619898 POLR3GLQ9BT43 218 aa17.34■□□□□ 0.37
SPCS1-206ENST00000619898 MYT1LQ9UL68 1186 aa17.33■□□□□ 0.36
SPCS1-206ENST00000619898 TOP2AP11388 1531 aaKnown RBP17.32■□□□□ 0.36
SPCS1-206ENST00000619898 RUSC2Q8N2Y8 1516 aa17.31■□□□□ 0.36
SPCS1-206ENST00000619898 VPS8Q8N3P4 1428 aa17.29■□□□□ 0.36
SPCS1-206ENST00000619898 TRIM52Q96A61 297 aa17.29■□□□□ 0.36
SPCS1-206ENST00000619898 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
SPCS1-206ENST00000619898 HIRIP3Q9BW71 556 aaPredicted RBP17.24■□□□□ 0.35
SPCS1-206ENST00000619898 SUPT16HQ9Y5B9 1047 aaKnown RBP17.2■□□□□ 0.34
SPCS1-206ENST00000619898 TONSLQ96HA7 1378 aa17.19■□□□□ 0.34
SPCS1-206ENST00000619898 KANK4Q5T7N3 995 aaPredicted RBP17.18■□□□□ 0.34
SPCS1-206ENST00000619898 CDK11AQ9UQ88 783 aaPredicted RBP17.18■□□□□ 0.34
SPCS1-206ENST00000619898 SMARCA4P51532 1647 aa17.15■□□□□ 0.34
SPCS1-206ENST00000619898 FBLN2P98095 1184 aa17.15■□□□□ 0.34
SPCS1-206ENST00000619898 KIF27Q86VH2 1401 aa17.14■□□□□ 0.33
SPCS1-206ENST00000619898 HNRNPUQ00839 825 aaKnown RBP eCLIP17.13■□□□□ 0.33
SPCS1-206ENST00000619898 CCNB3Q8WWL7 1395 aa17.12■□□□□ 0.33
SPCS1-206ENST00000619898 SMARCA2P51531 1590 aa17.11■□□□□ 0.33
SPCS1-206ENST00000619898 SIN3AQ96ST3 1273 aa17.11■□□□□ 0.33
SPCS1-206ENST00000619898 RAPGEF2Q9Y4G8 1499 aa17.11■□□□□ 0.33
SPCS1-206ENST00000619898 ARID3CA6NKF2 412 aa17.07■□□□□ 0.32
SPCS1-206ENST00000619898 ZNF326Q5BKZ1 582 aaKnown RBP17.04■□□□□ 0.32
SPCS1-206ENST00000619898 DHX57Q6P158 1386 aaKnown RBP17.02■□□□□ 0.32
SPCS1-206ENST00000619898 CHIC2Q9UKJ5 165 aa17.01■□□□□ 0.31
SPCS1-206ENST00000619898 IRX6P78412 446 aaPredicted RBP17■□□□□ 0.31
SPCS1-206ENST00000619898 MTUS2Q5JR59 1369 aa16.99■□□□□ 0.31
SPCS1-206ENST00000619898 ANP32EQ9BTT0 268 aa16.98■□□□□ 0.31
SPCS1-206ENST00000619898 FAM9BQ8IZU0 186 aa16.98■□□□□ 0.31
SPCS1-206ENST00000619898 RAB3GAP2Q9H2M9 1393 aa16.96■□□□□ 0.31
SPCS1-206ENST00000619898 RTL5Q5HYW3 569 aaPredicted RBP16.92■□□□□ 0.3
SPCS1-206ENST00000619898 SETD5Q9C0A6 1442 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms