RNA–Protein interactions for RNA: ENST00000617767.4

CPNE4-214, Transcript of copine 4, humanhuman

TSL 2 BASIC

Gene CPNE4, Length 3,556 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-214ENST00000617767 NISCHQ9Y2I1 1504 aa11.42□□□□□ -0.58
CPNE4-214ENST00000617767 DCAF8L2P0C7V8 631 aa9.96□□□□□ -0.81
CPNE4-214ENST00000617767 SHROOM4Q9ULL8 1493 aa9.96□□□□□ -0.82
CPNE4-214ENST00000617767 PELP1Q8IZL8 1130 aaKnown RBP9.72□□□□□ -0.85
CPNE4-214ENST00000617767 CCDC180Q9P1Z9 1646 aa9.68□□□□□ -0.86
CPNE4-214ENST00000617767 SUPT5HO00267 1087 aaKnown RBP9.67□□□□□ -0.86
CPNE4-214ENST00000617767 ZCCHC6Q5VYS8 1495 aaKnown RBP9.58□□□□□ -0.88
CPNE4-214ENST00000617767 MYT1Q01538 1121 aa9.52□□□□□ -0.89
CPNE4-214ENST00000617767 ABCC9O60706 1549 aa9.45□□□□□ -0.9
CPNE4-214ENST00000617767 SCRIBQ14160 1630 aa9.3□□□□□ -0.92
CPNE4-214ENST00000617767 DCAF1Q9Y4B6 1507 aa9.19□□□□□ -0.94
CPNE4-214ENST00000617767 PRKCSHP14314 528 aaPredicted RBP9.13□□□□□ -0.95
CPNE4-214ENST00000617767 CHIC1Q5VXU3 224 aa9.12□□□□□ -0.95
CPNE4-214ENST00000617767 TTBK1Q5TCY1 1321 aaPredicted RBP9.11□□□□□ -0.95
CPNE4-214ENST00000617767 HRCP23327 699 aa9.11□□□□□ -0.95
CPNE4-214ENST00000617767 PABPN1Q86U42 306 aaKnown RBP eCLIP9.09□□□□□ -0.95
CPNE4-214ENST00000617767 EHMT2Q96KQ7 1210 aa9.09□□□□□ -0.95
CPNE4-214ENST00000617767 MYO15BQ96JP2 1530 aa9.05□□□□□ -0.96
CPNE4-214ENST00000617767 CECR2Q9BXF3 1484 aa9.04□□□□□ -0.96
CPNE4-214ENST00000617767 NACADO15069 1562 aa9.03□□□□□ -0.96
CPNE4-214ENST00000617767 SCAF1Q9H7N4 1312 aaKnown RBP9.02□□□□□ -0.97
CPNE4-214ENST00000617767 RSF1Q96T23 1441 aaPredicted RBP9.01□□□□□ -0.97
CPNE4-214ENST00000617767 FAM9AQ8IZU1 332 aaPredicted RBP9.01□□□□□ -0.97
CPNE4-214ENST00000617767 LOC105371045A0A1W2PR82 267 aa9□□□□□ -0.97
CPNE4-214ENST00000617767 RB1CC1Q8TDY2 1594 aa8.99□□□□□ -0.97
CPNE4-214ENST00000617767 PPARGC1BQ86YN6 1023 aaKnown RBP8.99□□□□□ -0.97
CPNE4-214ENST00000617767 MROH2BQ7Z745 1585 aa8.94□□□□□ -0.98
CPNE4-214ENST00000617767 BCL11AQ9H165 835 aa8.94□□□□□ -0.98
CPNE4-214ENST00000617767 WIZO95785 1651 aa8.91□□□□□ -0.98
CPNE4-214ENST00000617767 TRIM41Q8WV44 630 aa8.91□□□□□ -0.98
CPNE4-214ENST00000617767 UNC13AQ9UPW8 1703 aa8.9□□□□□ -0.98
CPNE4-214ENST00000617767 ERICH6Q7L0X2 663 aa8.81□□□□□ -1
CPNE4-214ENST00000617767 PCGF6Q9BYE7 350 aa8.8□□□□□ -1
CPNE4-214ENST00000617767 APLP2Q06481 763 aa8.78□□□□□ -1
CPNE4-214ENST00000617767 BAZ1AQ9NRL2 1556 aaPredicted RBP8.77□□□□□ -1.01
CPNE4-214ENST00000617767 BICRAQ9NZM4 1560 aa8.76□□□□□ -1.01
CPNE4-214ENST00000617767 SMARCA4P51532 1647 aa8.74□□□□□ -1.01
CPNE4-214ENST00000617767 ABCC8Q09428 1581 aa8.7□□□□□ -1.02
CPNE4-214ENST00000617767 CCDC88BA6NC98 1476 aa8.7□□□□□ -1.02
CPNE4-214ENST00000617767 SLC24A1O60721 1099 aa8.68□□□□□ -1.02
CPNE4-214ENST00000617767 RANGAP1P46060 587 aaPredicted RBP8.66□□□□□ -1.02
CPNE4-214ENST00000617767 TOP2AP11388 1531 aaKnown RBP8.65□□□□□ -1.02
CPNE4-214ENST00000617767 SMARCA2P51531 1590 aa8.64□□□□□ -1.03
CPNE4-214ENST00000617767 CENPBP07199 599 aaPredicted RBP8.62□□□□□ -1.03
CPNE4-214ENST00000617767 BAZ1BQ9UIG0 1483 aaKnown RBP8.59□□□□□ -1.03
CPNE4-214ENST00000617767 ATAD2BQ9ULI0 1458 aa8.59□□□□□ -1.04
CPNE4-214ENST00000617767 UBTFP17480 764 aaKnown RBP8.57□□□□□ -1.04
CPNE4-214ENST00000617767 GTF3C3Q9Y5Q9 886 aa8.57□□□□□ -1.04
CPNE4-214ENST00000617767 SOGA1O94964 1423 aa8.57□□□□□ -1.04
CPNE4-214ENST00000617767 ACIN1Q9UKV3 1341 aaKnown RBP8.57□□□□□ -1.04
CPNE4-214ENST00000617767 RUSC2Q8N2Y8 1516 aa8.56□□□□□ -1.04
CPNE4-214ENST00000617767 NEUROD1Q13562 356 aa8.54□□□□□ -1.04
CPNE4-214ENST00000617767 EIF4G1Q04637 1599 aaKnown RBP8.53□□□□□ -1.04
CPNE4-214ENST00000617767 TRIM26Q12899 539 aaPredicted RBP8.5□□□□□ -1.05
CPNE4-214ENST00000617767 WRNQ14191 1432 aaPredicted RBP eCLIP8.49□□□□□ -1.05
CPNE4-214ENST00000617767 CSRNP3Q8WYN3 585 aa8.48□□□□□ -1.05
CPNE4-214ENST00000617767 SYNJ1O43426 1573 aa8.46□□□□□ -1.06
CPNE4-214ENST00000617767 PEG3Q9GZU2 1588 aa8.45□□□□□ -1.06
CPNE4-214ENST00000617767 DNAJC5BQ9UF47 199 aa8.45□□□□□ -1.06
CPNE4-214ENST00000617767 ANP32EQ9BTT0 268 aa8.45□□□□□ -1.06
CPNE4-214ENST00000617767 CEP162Q5TB80 1403 aa8.4□□□□□ -1.07
CPNE4-214ENST00000617767 CC2D2AQ9P2K1 1620 aa8.39□□□□□ -1.07
CPNE4-214ENST00000617767 NCAPD3P42695 1498 aa8.39□□□□□ -1.07
CPNE4-214ENST00000617767 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.38□□□□□ -1.07
CPNE4-214ENST00000617767 EIF5BO60841 1220 aaKnown RBP8.36□□□□□ -1.07
CPNE4-214ENST00000617767 RAPGEF2Q9Y4G8 1499 aa8.34□□□□□ -1.07
CPNE4-214ENST00000617767 ANO8Q9HCE9 1232 aaPredicted RBP8.34□□□□□ -1.07
CPNE4-214ENST00000617767 NESP48681 1621 aa8.34□□□□□ -1.07
CPNE4-214ENST00000617767 HMGXB3Q12766 1538 aa8.33□□□□□ -1.08
CPNE4-214ENST00000617767 GOLGA3Q08378 1498 aa8.33□□□□□ -1.08
CPNE4-214ENST00000617767 DAXXQ9UER7 740 aaPredicted RBP8.32□□□□□ -1.08
CPNE4-214ENST00000617767 CUX1P39880 1505 aa8.32□□□□□ -1.08
CPNE4-214ENST00000617767 TNIKQ9UKE5 1360 aa8.31□□□□□ -1.08
CPNE4-214ENST00000617767 ZEB1P37275 1124 aaPredicted RBP8.31□□□□□ -1.08
CPNE4-214ENST00000617767 HNRNPUL2Q1KMD3 747 aaKnown RBP8.31□□□□□ -1.08
CPNE4-214ENST00000617767 P3H3Q8IVL6 736 aa8.3□□□□□ -1.08
CPNE4-214ENST00000617767 CCER1Q8TC90 406 aaPredicted RBP8.3□□□□□ -1.08
CPNE4-214ENST00000617767 ATP1B4Q9UN42 357 aaPredicted RBP8.3□□□□□ -1.08
CPNE4-214ENST00000617767 CFTRP13569 1480 aa8.29□□□□□ -1.08
CPNE4-214ENST00000617767 TOP2BQ02880 1626 aa8.29□□□□□ -1.08
CPNE4-214ENST00000617767 CADPSQ9ULU8 1353 aa8.29□□□□□ -1.08
CPNE4-214ENST00000617767 PLEKHG5O94827 1062 aa8.29□□□□□ -1.08
CPNE4-214ENST00000617767 CLIP1P30622 1438 aa8.29□□□□□ -1.08
CPNE4-214ENST00000617767 EEA1Q15075 1411 aa8.28□□□□□ -1.08
CPNE4-214ENST00000617767 CEP164Q9UPV0 1460 aa8.28□□□□□ -1.08
CPNE4-214ENST00000617767 CUX2O14529 1486 aa8.26□□□□□ -1.09
CPNE4-214ENST00000617767 ITGAEP38570 1179 aa8.24□□□□□ -1.09
CPNE4-214ENST00000617767 FANCD2Q9BXW9 1451 aa8.24□□□□□ -1.09
CPNE4-214ENST00000617767 RAD54L2Q9Y4B4 1467 aa8.24□□□□□ -1.09
CPNE4-214ENST00000617767 KIF27Q86VH2 1401 aa8.24□□□□□ -1.09
CPNE4-214ENST00000617767 FGD5Q6ZNL6 1462 aa8.23□□□□□ -1.09
CPNE4-214ENST00000617767 BIVM-ERCC5R4GMW8 1640 aa8.23□□□□□ -1.09
CPNE4-214ENST00000617767 KIF21BO75037 1637 aa8.2□□□□□ -1.1
CPNE4-214ENST00000617767 UBE2Q2Q8WVN8 375 aa8.2□□□□□ -1.1
CPNE4-214ENST00000617767 KANK4Q5T7N3 995 aaPredicted RBP8.2□□□□□ -1.1
CPNE4-214ENST00000617767 TDRD9Q8NDG6 1382 aaKnown RBP8.19□□□□□ -1.1
CPNE4-214ENST00000617767 ARID3CA6NKF2 412 aa8.18□□□□□ -1.1
CPNE4-214ENST00000617767 IGF1RP08069 1367 aa8.18□□□□□ -1.1
CPNE4-214ENST00000617767 CARMIL1Q5VZK9 1371 aa8.17□□□□□ -1.1
CPNE4-214ENST00000617767 CCDC136Q96JN2 1154 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms