RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 NISCHQ9Y2I1 1504 aa29.51■■■□□ 2.31
SHROOM1-208ENST00000617339 DCAF8L2P0C7V8 631 aa26.34■■□□□ 1.81
SHROOM1-208ENST00000617339 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
SHROOM1-208ENST00000617339 SUPT5HO00267 1087 aaKnown RBP25.61■■□□□ 1.69
SHROOM1-208ENST00000617339 ZCCHC6Q5VYS8 1495 aaKnown RBP24.75■■□□□ 1.55
SHROOM1-208ENST00000617339 CCDC180Q9P1Z9 1646 aa24.65■■□□□ 1.54
SHROOM1-208ENST00000617339 ABCC9O60706 1549 aa24.35■■□□□ 1.49
SHROOM1-208ENST00000617339 CHIC1Q5VXU3 224 aa24.15■■□□□ 1.46
SHROOM1-208ENST00000617339 EHMT2Q96KQ7 1210 aa24.12■■□□□ 1.45
SHROOM1-208ENST00000617339 SCRIBQ14160 1630 aa23.93■■□□□ 1.42
SHROOM1-208ENST00000617339 LOC105371045A0A1W2PR82 267 aa23.89■■□□□ 1.42
SHROOM1-208ENST00000617339 FAM9AQ8IZU1 332 aaPredicted RBP23.88■■□□□ 1.41
SHROOM1-208ENST00000617339 MYO15BQ96JP2 1530 aa23.77■■□□□ 1.4
SHROOM1-208ENST00000617339 HRCP23327 699 aa23.72■■□□□ 1.39
SHROOM1-208ENST00000617339 DCAF1Q9Y4B6 1507 aa23.66■■□□□ 1.38
SHROOM1-208ENST00000617339 PABPN1Q86U42 306 aaKnown RBP eCLIP23.64■■□□□ 1.37
SHROOM1-208ENST00000617339 PCGF6Q9BYE7 350 aa23.57■■□□□ 1.36
SHROOM1-208ENST00000617339 PPARGC1BQ86YN6 1023 aaKnown RBP23.57■■□□□ 1.36
SHROOM1-208ENST00000617339 TRIM41Q8WV44 630 aa23.56■■□□□ 1.36
SHROOM1-208ENST00000617339 RSF1Q96T23 1441 aaPredicted RBP23.46■■□□□ 1.35
SHROOM1-208ENST00000617339 CECR2Q9BXF3 1484 aa23.44■■□□□ 1.34
SHROOM1-208ENST00000617339 NACADO15069 1562 aa23.18■■□□□ 1.3
SHROOM1-208ENST00000617339 TTBK1Q5TCY1 1321 aaPredicted RBP23.15■■□□□ 1.3
SHROOM1-208ENST00000617339 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.3
SHROOM1-208ENST00000617339 RB1CC1Q8TDY2 1594 aa23.13■■□□□ 1.29
SHROOM1-208ENST00000617339 WIZO95785 1651 aa22.96■■□□□ 1.27
SHROOM1-208ENST00000617339 RANGAP1P46060 587 aaPredicted RBP22.9■■□□□ 1.26
SHROOM1-208ENST00000617339 PELP1Q8IZL8 1130 aaKnown RBP22.72■■□□□ 1.23
SHROOM1-208ENST00000617339 TRIM26Q12899 539 aaPredicted RBP22.7■■□□□ 1.22
SHROOM1-208ENST00000617339 UBTFP17480 764 aaKnown RBP22.69■■□□□ 1.22
SHROOM1-208ENST00000617339 BAZ1AQ9NRL2 1556 aaPredicted RBP22.63■■□□□ 1.21
SHROOM1-208ENST00000617339 ABCC8Q09428 1581 aa22.58■■□□□ 1.21
SHROOM1-208ENST00000617339 CCDC88BA6NC98 1476 aa22.57■■□□□ 1.2
SHROOM1-208ENST00000617339 SCAF1Q9H7N4 1312 aaKnown RBP22.56■■□□□ 1.2
SHROOM1-208ENST00000617339 SMARCA4P51532 1647 aa22.46■■□□□ 1.19
SHROOM1-208ENST00000617339 UNC13AQ9UPW8 1703 aa22.43■■□□□ 1.18
SHROOM1-208ENST00000617339 SOGA1O94964 1423 aa22.42■■□□□ 1.18
SHROOM1-208ENST00000617339 CSRNP3Q8WYN3 585 aa22.35■■□□□ 1.17
SHROOM1-208ENST00000617339 BICRAQ9NZM4 1560 aa22.35■■□□□ 1.17
SHROOM1-208ENST00000617339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.35■■□□□ 1.17
SHROOM1-208ENST00000617339 RUSC2Q8N2Y8 1516 aa22.32■■□□□ 1.16
SHROOM1-208ENST00000617339 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
SHROOM1-208ENST00000617339 SMARCA2P51531 1590 aa22.27■■□□□ 1.15
SHROOM1-208ENST00000617339 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
SHROOM1-208ENST00000617339 ZEB1P37275 1124 aaPredicted RBP22.2■■□□□ 1.15
SHROOM1-208ENST00000617339 CCER1Q8TC90 406 aaPredicted RBP22.2■■□□□ 1.15
SHROOM1-208ENST00000617339 ATAD2BQ9ULI0 1458 aa22.17■■□□□ 1.14
SHROOM1-208ENST00000617339 WRNQ14191 1432 aaPredicted RBP eCLIP22.15■■□□□ 1.14
SHROOM1-208ENST00000617339 HNRNPUL2Q1KMD3 747 aaKnown RBP22.11■■□□□ 1.13
SHROOM1-208ENST00000617339 ATP1B4Q9UN42 357 aaPredicted RBP22.07■■□□□ 1.12
SHROOM1-208ENST00000617339 APLP2Q06481 763 aa22.05■■□□□ 1.12
SHROOM1-208ENST00000617339 CEP162Q5TB80 1403 aa22.03■■□□□ 1.12
SHROOM1-208ENST00000617339 NEUROD1Q13562 356 aa21.99■■□□□ 1.11
SHROOM1-208ENST00000617339 ACIN1Q9UKV3 1341 aaKnown RBP21.94■■□□□ 1.1
SHROOM1-208ENST00000617339 GTF3C3Q9Y5Q9 886 aa21.92■■□□□ 1.1
SHROOM1-208ENST00000617339 EIF4G1Q04637 1599 aaKnown RBP21.91■■□□□ 1.1
SHROOM1-208ENST00000617339 ITGAEP38570 1179 aa21.87■■□□□ 1.09
SHROOM1-208ENST00000617339 P3H3Q8IVL6 736 aa21.86■■□□□ 1.09
SHROOM1-208ENST00000617339 SYNJ1O43426 1573 aa21.84■■□□□ 1.09
SHROOM1-208ENST00000617339 TNIKQ9UKE5 1360 aa21.84■■□□□ 1.09
SHROOM1-208ENST00000617339 DNAJC5BQ9UF47 199 aa21.82■■□□□ 1.08
SHROOM1-208ENST00000617339 GOLGA3Q08378 1498 aa21.77■■□□□ 1.08
SHROOM1-208ENST00000617339 RAPGEF2Q9Y4G8 1499 aa21.76■■□□□ 1.07
SHROOM1-208ENST00000617339 CLIP1P30622 1438 aa21.75■■□□□ 1.07
SHROOM1-208ENST00000617339 MYT1Q01538 1121 aa21.75■■□□□ 1.07
SHROOM1-208ENST00000617339 CENPBP07199 599 aaPredicted RBP21.71■■□□□ 1.07
SHROOM1-208ENST00000617339 EEA1Q15075 1411 aa21.67■■□□□ 1.06
SHROOM1-208ENST00000617339 DIEXFQ68CQ4 756 aaKnown RBP21.66■■□□□ 1.06
SHROOM1-208ENST00000617339 PEG3Q9GZU2 1588 aa21.65■■□□□ 1.06
SHROOM1-208ENST00000617339 YTHDC1Q96MU7 727 aaKnown RBP21.64■■□□□ 1.05
SHROOM1-208ENST00000617339 CEP164Q9UPV0 1460 aa21.64■■□□□ 1.05
SHROOM1-208ENST00000617339 NCAPD3P42695 1498 aa21.63■■□□□ 1.05
SHROOM1-208ENST00000617339 KANK4Q5T7N3 995 aaPredicted RBP21.59■■□□□ 1.05
SHROOM1-208ENST00000617339 CUX2O14529 1486 aa21.5■■□□□ 1.03
SHROOM1-208ENST00000617339 ARID3CA6NKF2 412 aa21.5■■□□□ 1.03
SHROOM1-208ENST00000617339 CADPSQ9ULU8 1353 aa21.5■■□□□ 1.03
SHROOM1-208ENST00000617339 KIF27Q86VH2 1401 aa21.48■■□□□ 1.03
SHROOM1-208ENST00000617339 CUX1P39880 1505 aa21.48■■□□□ 1.03
SHROOM1-208ENST00000617339 NESP48681 1621 aa21.48■■□□□ 1.03
SHROOM1-208ENST00000617339 FBLN2P98095 1184 aa21.43■■□□□ 1.02
SHROOM1-208ENST00000617339 CFTRP13569 1480 aa21.43■■□□□ 1.02
SHROOM1-208ENST00000617339 CC2D2AQ9P2K1 1620 aa21.42■■□□□ 1.02
SHROOM1-208ENST00000617339 FAM50AQ14320 339 aaKnown RBP21.4■■□□□ 1.02
SHROOM1-208ENST00000617339 VPS8Q8N3P4 1428 aa21.39■■□□□ 1.02
SHROOM1-208ENST00000617339 TOP2BQ02880 1626 aa21.37■■□□□ 1.01
SHROOM1-208ENST00000617339 RAD54L2Q9Y4B4 1467 aa21.36■■□□□ 1.01
SHROOM1-208ENST00000617339 HMGXB3Q12766 1538 aa21.35■■□□□ 1.01
SHROOM1-208ENST00000617339 CARMIL1Q5VZK9 1371 aa21.34■■□□□ 1.01
SHROOM1-208ENST00000617339 TDRD9Q8NDG6 1382 aaKnown RBP21.34■■□□□ 1.01
SHROOM1-208ENST00000617339 IGF1RP08069 1367 aa21.33■■□□□ 1.01
SHROOM1-208ENST00000617339 FGD5Q6ZNL6 1462 aa21.29■■□□□ 1
SHROOM1-208ENST00000617339 FANCD2Q9BXW9 1451 aa21.29■■□□□ 1
SHROOM1-208ENST00000617339 KIF21BO75037 1637 aa21.29■■□□□ 1
SHROOM1-208ENST00000617339 ARAP1Q96P48 1450 aa21.25■□□□□ 0.99
SHROOM1-208ENST00000617339 PRXQ9BXM0 1461 aa21.24■□□□□ 0.99
SHROOM1-208ENST00000617339 ZNF316A6NFI3 1004 aaPredicted RBP21.16■□□□□ 0.98
SHROOM1-208ENST00000617339 MIER1Q8N108 512 aa21.13■□□□□ 0.97
SHROOM1-208ENST00000617339 BIVM-ERCC5R4GMW8 1640 aa21.11■□□□□ 0.97
SHROOM1-208ENST00000617339 FHOD3Q2V2M9 1422 aa21.1■□□□□ 0.97
SHROOM1-208ENST00000617339 ARHGAP35Q9NRY4 1499 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms