RNA–Protein interactions for RNA: ENST00000617271.4

PCDH15-231, Transcript of protocadherin related 15, human

APPRIS P3 TSL 5 BASIC

Gene PCDH15, Length 6,425 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH15-231	ENST00000617271	DCAF8L2	P0C7V8	631 aa		12.59	□□□□□ -0.39
PCDH15-231	ENST00000617271	NISCH	Q9Y2I1	1504 aa		11.79	□□□□□ -0.52
PCDH15-231	ENST00000617271	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.78	□□□□□ -0.52
PCDH15-231	ENST00000617271	PELP1	Q8IZL8	1130 aa	Known RBP	11.77	□□□□□ -0.53
PCDH15-231	ENST00000617271	SUPT5H	O00267	1087 aa	Known RBP	11.76	□□□□□ -0.53
PCDH15-231	ENST00000617271	APLP2	Q06481	763 aa		11.65	□□□□□ -0.54
PCDH15-231	ENST00000617271	SHROOM4	Q9ULL8	1493 aa		11.52	□□□□□ -0.57
PCDH15-231	ENST00000617271	EHMT2	Q96KQ7	1210 aa		11.38	□□□□□ -0.59
PCDH15-231	ENST00000617271	CCER1	Q8TC90	406 aa	Predicted RBP	11.24	□□□□□ -0.61
PCDH15-231	ENST00000617271	ERICH6	Q7L0X2	663 aa		11.18	□□□□□ -0.62
PCDH15-231	ENST00000617271	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.1	□□□□□ -0.63
PCDH15-231	ENST00000617271	ZEB1	P37275	1124 aa	Predicted RBP	11.1	□□□□□ -0.63
PCDH15-231	ENST00000617271	CENPB	P07199	599 aa	Predicted RBP	11.07	□□□□□ -0.64
PCDH15-231	ENST00000617271	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.04	□□□□□ -0.64
PCDH15-231	ENST00000617271	TRIM41	Q8WV44	630 aa		11.02	□□□□□ -0.64
PCDH15-231	ENST00000617271	RANGAP1	P46060	587 aa	Predicted RBP	11.02	□□□□□ -0.65
PCDH15-231	ENST00000617271	NEFL	P07196	543 aa		10.97	□□□□□ -0.65
PCDH15-231	ENST00000617271	UBTF	P17480	764 aa	Known RBP	10.97	□□□□□ -0.65
PCDH15-231	ENST00000617271	PCGF6	Q9BYE7	350 aa		10.96	□□□□□ -0.65
PCDH15-231	ENST00000617271	MYT1L	Q9UL68	1186 aa		10.88	□□□□□ -0.67
PCDH15-231	ENST00000617271	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	10.78	□□□□□ -0.68
PCDH15-231	ENST00000617271	HNRNPUL2	Q1KMD3	747 aa	Known RBP	10.78	□□□□□ -0.68
PCDH15-231	ENST00000617271	DAXX	Q9UER7	740 aa	Predicted RBP	10.75	□□□□□ -0.69
PCDH15-231	ENST00000617271	MYT1	Q01538	1121 aa		10.7	□□□□□ -0.7
PCDH15-231	ENST00000617271	POLR3GL	Q9BT43	218 aa		10.62	□□□□□ -0.71
PCDH15-231	ENST00000617271	YTHDC1	Q96MU7	727 aa	Known RBP	10.62	□□□□□ -0.71
PCDH15-231	ENST00000617271	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.57	□□□□□ -0.72
PCDH15-231	ENST00000617271	TRIM26	Q12899	539 aa	Predicted RBP	10.56	□□□□□ -0.72
PCDH15-231	ENST00000617271	ITGAE	P38570	1179 aa		10.55	□□□□□ -0.72
PCDH15-231	ENST00000617271	CHIC1	Q5VXU3	224 aa		10.52	□□□□□ -0.73
PCDH15-231	ENST00000617271	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.48	□□□□□ -0.73
PCDH15-231	ENST00000617271	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.44	□□□□□ -0.74
PCDH15-231	ENST00000617271	CLSPN	Q9HAW4	1339 aa		10.44	□□□□□ -0.74
PCDH15-231	ENST00000617271	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.42	□□□□□ -0.74
PCDH15-231	ENST00000617271	TRIM52	Q96A61	297 aa		10.4	□□□□□ -0.75
PCDH15-231	ENST00000617271	FAM50A	Q14320	339 aa	Known RBP	10.38	□□□□□ -0.75
PCDH15-231	ENST00000617271	RTL5	Q5HYW3	569 aa	Predicted RBP	10.37	□□□□□ -0.75
PCDH15-231	ENST00000617271	NEFM	P07197	916 aa		10.34	□□□□□ -0.75
PCDH15-231	ENST00000617271	CNGB1	Q14028	1251 aa	Predicted RBP	10.34	□□□□□ -0.75
PCDH15-231	ENST00000617271	ABCC9	O60706	1549 aa		10.31	□□□□□ -0.76
PCDH15-231	ENST00000617271	HRC	P23327	699 aa		10.3	□□□□□ -0.76
PCDH15-231	ENST00000617271	BCAN	Q96GW7	911 aa		10.29	□□□□□ -0.76
PCDH15-231	ENST00000617271	FBLN2	P98095	1184 aa		10.27	□□□□□ -0.77
PCDH15-231	ENST00000617271	ESF1	Q9H501	851 aa	Known RBP	10.25	□□□□□ -0.77
PCDH15-231	ENST00000617271	CANX	P27824	592 aa	Known RBP	10.25	□□□□□ -0.77
PCDH15-231	ENST00000617271	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
PCDH15-231	ENST00000617271	SLC24A1	O60721	1099 aa		10.23	□□□□□ -0.77
PCDH15-231	ENST00000617271	ANP32C	O43423	234 aa		10.23	□□□□□ -0.77
PCDH15-231	ENST00000617271	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.21	□□□□□ -0.78
PCDH15-231	ENST00000617271	ZNF326	Q5BKZ1	582 aa	Known RBP	10.2	□□□□□ -0.78
PCDH15-231	ENST00000617271	NEUROD1	Q13562	356 aa		10.2	□□□□□ -0.78
PCDH15-231	ENST00000617271	LOC105371045	A0A1W2PR82	267 aa		10.16	□□□□□ -0.78
PCDH15-231	ENST00000617271	DIEXF	Q68CQ4	756 aa	Known RBP	10.16	□□□□□ -0.78
PCDH15-231	ENST00000617271	NPM1	P06748	294 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
PCDH15-231	ENST00000617271	STAG3	Q9UJ98	1225 aa		10.12	□□□□□ -0.79
PCDH15-231	ENST00000617271	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.07	□□□□□ -0.8
PCDH15-231	ENST00000617271	ANP32B	Q92688	251 aa	Known RBP	10.02	□□□□□ -0.81
PCDH15-231	ENST00000617271	ANP32A	P39687	249 aa	Known RBP	10.01	□□□□□ -0.81
PCDH15-231	ENST00000617271	CHGA	P10645	457 aa	Known RBP	10	□□□□□ -0.81
PCDH15-231	ENST00000617271	P3H3	Q8IVL6	736 aa		9.99	□□□□□ -0.81
PCDH15-231	ENST00000617271	BCL11A	Q9H165	835 aa		9.98	□□□□□ -0.81
PCDH15-231	ENST00000617271	ARID3C	A6NKF2	412 aa		9.98	□□□□□ -0.81
PCDH15-231	ENST00000617271	UPF2	Q9HAU5	1272 aa	Known RBP	9.98	□□□□□ -0.81
PCDH15-231	ENST00000617271	CSRNP3	Q8WYN3	585 aa		9.97	□□□□□ -0.81
PCDH15-231	ENST00000617271	TONSL	Q96HA7	1378 aa		9.97	□□□□□ -0.81
PCDH15-231	ENST00000617271	HSP90AA1	P07900	732 aa	Known RBP	9.94	□□□□□ -0.82
PCDH15-231	ENST00000617271	SCRIB	Q14160	1630 aa		9.94	□□□□□ -0.82
PCDH15-231	ENST00000617271	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	9.94	□□□□□ -0.82
PCDH15-231	ENST00000617271	ACIN1	Q9UKV3	1341 aa	Known RBP	9.93	□□□□□ -0.82
PCDH15-231	ENST00000617271	PLPPR3	Q6T4P5	718 aa		9.92	□□□□□ -0.82
PCDH15-231	ENST00000617271	NPM2	Q86SE8	214 aa	Known RBP	9.9	□□□□□ -0.82
PCDH15-231	ENST00000617271	CDK11B	P21127	795 aa	Known RBP	9.9	□□□□□ -0.82
PCDH15-231	ENST00000617271	WDR43	Q15061	677 aa	Known RBP eCLIP	9.88	□□□□□ -0.83
PCDH15-231	ENST00000617271	MYH16	Q9H6N6	1097 aa		9.88	□□□□□ -0.83
PCDH15-231	ENST00000617271	SCAF1	Q9H7N4	1312 aa	Known RBP	9.87	□□□□□ -0.83
PCDH15-231	ENST00000617271	TSPY4	P0CV99	314 aa		9.87	□□□□□ -0.83
PCDH15-231	ENST00000617271	TSPY10	P0CW01	314 aa		9.87	□□□□□ -0.83
PCDH15-231	ENST00000617271	CHMP7	Q8WUX9	453 aa	Predicted RBP	9.85	□□□□□ -0.83
PCDH15-231	ENST00000617271	PPP1R15A	O75807	674 aa	Predicted RBP	9.84	□□□□□ -0.83
PCDH15-231	ENST00000617271	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	9.84	□□□□□ -0.83
PCDH15-231	ENST00000617271	GTF3C3	Q9Y5Q9	886 aa		9.82	□□□□□ -0.84
PCDH15-231	ENST00000617271	CCDC180	Q9P1Z9	1646 aa		9.82	□□□□□ -0.84
PCDH15-231	ENST00000617271	EIF5B	O60841	1220 aa	Known RBP	9.82	□□□□□ -0.84
PCDH15-231	ENST00000617271	RB1CC1	Q8TDY2	1594 aa		9.81	□□□□□ -0.84
PCDH15-231	ENST00000617271	MTUS2	Q5JR59	1369 aa		9.81	□□□□□ -0.84
PCDH15-231	ENST00000617271	RSF1	Q96T23	1441 aa	Predicted RBP	9.81	□□□□□ -0.84
PCDH15-231	ENST00000617271		A0A0G2JS52	829 aa		9.8	□□□□□ -0.84
PCDH15-231	ENST00000617271	C14orf37	Q86TY3	774 aa		9.79	□□□□□ -0.84
PCDH15-231	ENST00000617271	TMC1	Q8TDI8	760 aa		9.79	□□□□□ -0.84
PCDH15-231	ENST00000617271	HAP1	P54257	671 aa	Predicted RBP	9.79	□□□□□ -0.84
PCDH15-231	ENST00000617271	ZBTB7C	A1YPR0	619 aa		9.77	□□□□□ -0.85
PCDH15-231	ENST00000617271	CDCA8	Q53HL2	280 aa		9.75	□□□□□ -0.85
PCDH15-231	ENST00000617271	HNRNPU	Q00839	825 aa	Known RBP eCLIP	9.75	□□□□□ -0.85
PCDH15-231	ENST00000617271	CFAP53	Q96M91	514 aa		9.75	□□□□□ -0.85
PCDH15-231	ENST00000617271	NCL	P19338	710 aa	Known RBP	9.74	□□□□□ -0.85
PCDH15-231	ENST00000617271	FAM9B	Q8IZU0	186 aa		9.74	□□□□□ -0.85
PCDH15-231	ENST00000617271	CHIC2	Q9UKJ5	165 aa		9.74	□□□□□ -0.85
PCDH15-231	ENST00000617271	ZCCHC6	Q5VYS8	1495 aa	Known RBP	9.73	□□□□□ -0.85
PCDH15-231	ENST00000617271	ARID4B	Q4LE39	1312 aa	Predicted RBP	9.73	□□□□□ -0.85
PCDH15-231	ENST00000617271	PLEKHD1	A6NEE1	506 aa		9.73	□□□□□ -0.85

Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms