RNA–Protein interactions for RNA: ENST00000613146.4

ACACA-228, Transcript of acetyl-CoA carboxylase alpha, humanhuman

TSL 1 (best)

Gene ACACA, Length 3,974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACACA-228ENST00000613146 NISCHQ9Y2I1 1504 aa16.15■□□□□ 0.18
ACACA-228ENST00000613146 DCAF8L2P0C7V8 631 aa14.29□□□□□ -0.12
ACACA-228ENST00000613146 SHROOM4Q9ULL8 1493 aa14.15□□□□□ -0.14
ACACA-228ENST00000613146 SUPT5HO00267 1087 aaKnown RBP13.74□□□□□ -0.21
ACACA-228ENST00000613146 CCDC180Q9P1Z9 1646 aa13.61□□□□□ -0.23
ACACA-228ENST00000613146 ZCCHC6Q5VYS8 1495 aaKnown RBP13.52□□□□□ -0.25
ACACA-228ENST00000613146 ABCC9O60706 1549 aa13.51□□□□□ -0.25
ACACA-228ENST00000613146 SCRIBQ14160 1630 aa13.15□□□□□ -0.3
ACACA-228ENST00000613146 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.324e-6■□□□□ 10.2
ACACA-228ENST00000613146 DCAF1Q9Y4B6 1507 aa12.96□□□□□ -0.33
ACACA-228ENST00000613146 EHMT2Q96KQ7 1210 aa12.96□□□□□ -0.34
ACACA-228ENST00000613146 CHIC1Q5VXU3 224 aa12.9□□□□□ -0.34
ACACA-228ENST00000613146 CECR2Q9BXF3 1484 aa12.83□□□□□ -0.35
ACACA-228ENST00000613146 FAM9AQ8IZU1 332 aaPredicted RBP12.81□□□□□ -0.36
ACACA-228ENST00000613146 NACADO15069 1562 aa12.8□□□□□ -0.36
ACACA-228ENST00000613146 RSF1Q96T23 1441 aaPredicted RBP12.76□□□□□ -0.37
ACACA-228ENST00000613146 LOC105371045A0A1W2PR82 267 aa12.76□□□□□ -0.37
ACACA-228ENST00000613146 RB1CC1Q8TDY2 1594 aa12.74□□□□□ -0.37
ACACA-228ENST00000613146 MYO15BQ96JP2 1530 aa12.71□□□□□ -0.38
ACACA-228ENST00000613146 MROH2BQ7Z745 1585 aa12.66□□□□□ -0.38
ACACA-228ENST00000613146 TRIM41Q8WV44 630 aa12.64□□□□□ -0.39
ACACA-228ENST00000613146 WIZO95785 1651 aa12.58□□□□□ -0.4
ACACA-228ENST00000613146 UNC13AQ9UPW8 1703 aa12.51□□□□□ -0.41
ACACA-228ENST00000613146 PPARGC1BQ86YN6 1023 aaKnown RBP12.43□□□□□ -0.42
ACACA-228ENST00000613146 BICRAQ9NZM4 1560 aa12.41□□□□□ -0.42
ACACA-228ENST00000613146 PCGF6Q9BYE7 350 aa12.39□□□□□ -0.43
ACACA-228ENST00000613146 BAZ1AQ9NRL2 1556 aaPredicted RBP12.39□□□□□ -0.43
ACACA-228ENST00000613146 TTBK1Q5TCY1 1321 aaPredicted RBP12.38□□□□□ -0.43
ACACA-228ENST00000613146 RANGAP1P46060 587 aaPredicted RBP12.36□□□□□ -0.43
ACACA-228ENST00000613146 SMARCA4P51532 1647 aa12.34□□□□□ -0.43
ACACA-228ENST00000613146 CCDC88BA6NC98 1476 aa12.32□□□□□ -0.44
ACACA-228ENST00000613146 ABCC8Q09428 1581 aa12.29□□□□□ -0.44
ACACA-228ENST00000613146 TOP2AP11388 1531 aaKnown RBP12.2□□□□□ -0.46
ACACA-228ENST00000613146 BAZ1BQ9UIG0 1483 aaKnown RBP12.2□□□□□ -0.46
ACACA-228ENST00000613146 ATAD2BQ9ULI0 1458 aa12.19□□□□□ -0.46
ACACA-228ENST00000613146 UBTFP17480 764 aaKnown RBP12.19□□□□□ -0.46
ACACA-228ENST00000613146 SMARCA2P51531 1590 aa12.18□□□□□ -0.46
ACACA-228ENST00000613146 DNAJC5BQ9UF47 199 aa12.17□□□□□ -0.46
ACACA-228ENST00000613146 SOGA1O94964 1423 aa12.14□□□□□ -0.47
ACACA-228ENST00000613146 RUSC2Q8N2Y8 1516 aa12.12□□□□□ -0.47
ACACA-228ENST00000613146 EIF4G1Q04637 1599 aaKnown RBP12.09□□□□□ -0.47
ACACA-228ENST00000613146 CSRNP3Q8WYN3 585 aa12.05□□□□□ -0.48
ACACA-228ENST00000613146 WRNQ14191 1432 aaPredicted RBP eCLIP12.03□□□□□ -0.48
ACACA-228ENST00000613146 TRIM26Q12899 539 aaPredicted RBP11.96□□□□□ -0.49
ACACA-228ENST00000613146 CC2D2AQ9P2K1 1620 aa11.93□□□□□ -0.5
ACACA-228ENST00000613146 SYNJ1O43426 1573 aa11.92□□□□□ -0.5
ACACA-228ENST00000613146 NCAPD3P42695 1498 aa11.92□□□□□ -0.5
ACACA-228ENST00000613146 PEG3Q9GZU2 1588 aa11.92□□□□□ -0.5
ACACA-228ENST00000613146 NESP48681 1621 aa11.89□□□□□ -0.51
ACACA-228ENST00000613146 HRCP23327 699 aa11.87□□□□□ -0.51
ACACA-228ENST00000613146 ATP1B4Q9UN42 357 aaPredicted RBP11.86□□□□□ -0.51
ACACA-228ENST00000613146 P3H3Q8IVL6 736 aa11.86□□□□□ -0.51
ACACA-228ENST00000613146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
ACACA-228ENST00000613146 CEP162Q5TB80 1403 aa11.84□□□□□ -0.51
ACACA-228ENST00000613146 CADPSQ9ULU8 1353 aa11.81□□□□□ -0.52
ACACA-228ENST00000613146 RAPGEF2Q9Y4G8 1499 aa11.79□□□□□ -0.52
ACACA-228ENST00000613146 HNRNPUL2Q1KMD3 747 aaKnown RBP11.79□□□□□ -0.52
ACACA-228ENST00000613146 APLP2Q06481 763 aa11.78□□□□□ -0.52
ACACA-228ENST00000613146 HMGXB3Q12766 1538 aa11.78□□□□□ -0.52
ACACA-228ENST00000613146 CUX1P39880 1505 aa11.76□□□□□ -0.53
ACACA-228ENST00000613146 CFTRP13569 1480 aa11.76□□□□□ -0.53
ACACA-228ENST00000613146 TNIKQ9UKE5 1360 aa11.74□□□□□ -0.53
ACACA-228ENST00000613146 GOLGA3Q08378 1498 aa11.73□□□□□ -0.53
ACACA-228ENST00000613146 ITGAEP38570 1179 aa11.73□□□□□ -0.53
ACACA-228ENST00000613146 CUX2O14529 1486 aa11.73□□□□□ -0.53
ACACA-228ENST00000613146 RAD54L2Q9Y4B4 1467 aa11.72□□□□□ -0.53
ACACA-228ENST00000613146 FANCD2Q9BXW9 1451 aa11.71□□□□□ -0.53
ACACA-228ENST00000613146 CCER1Q8TC90 406 aaPredicted RBP11.71□□□□□ -0.53
ACACA-228ENST00000613146 CLIP1P30622 1438 aa11.71□□□□□ -0.53
ACACA-228ENST00000613146 TDRD9Q8NDG6 1382 aaKnown RBP11.69□□□□□ -0.54
ACACA-228ENST00000613146 ARID3CA6NKF2 412 aa11.69□□□□□ -0.54
ACACA-228ENST00000613146 CEP164Q9UPV0 1460 aa11.68□□□□□ -0.54
ACACA-228ENST00000613146 EEA1Q15075 1411 aa11.68□□□□□ -0.54
ACACA-228ENST00000613146 TOP2BQ02880 1626 aa11.68□□□□□ -0.54
ACACA-228ENST00000613146 KIF27Q86VH2 1401 aa11.67□□□□□ -0.54
ACACA-228ENST00000613146 FGD5Q6ZNL6 1462 aa11.67□□□□□ -0.54
ACACA-228ENST00000613146 FBLN2P98095 1184 aa11.63□□□□□ -0.55
ACACA-228ENST00000613146 KANK4Q5T7N3 995 aaPredicted RBP11.63□□□□□ -0.55
ACACA-228ENST00000613146 IGF1RP08069 1367 aa11.62□□□□□ -0.55
ACACA-228ENST00000613146 CARMIL1Q5VZK9 1371 aa11.61□□□□□ -0.55
ACACA-228ENST00000613146 BIVM-ERCC5R4GMW8 1640 aa11.56□□□□□ -0.56
ACACA-228ENST00000613146 POLA1P09884 1462 aaPredicted RBP11.55□□□□□ -0.56
ACACA-228ENST00000613146 TOPBP1Q92547 1522 aa11.55□□□□□ -0.56
ACACA-228ENST00000613146 URB2Q14146 1524 aaKnown RBP11.53□□□□□ -0.56
ACACA-228ENST00000613146 PRXQ9BXM0 1461 aa11.53□□□□□ -0.56
ACACA-228ENST00000613146 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
ACACA-228ENST00000613146 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.577e-7■■■■■ 26.8
ACACA-228ENST00000613146 KIF21BO75037 1637 aa11.51□□□□□ -0.57
ACACA-228ENST00000613146 VPS8Q8N3P4 1428 aa11.5□□□□□ -0.57
ACACA-228ENST00000613146 ARAP1Q96P48 1450 aa11.5□□□□□ -0.57
ACACA-228ENST00000613146 FAM50AQ14320 339 aaKnown RBP11.5□□□□□ -0.57
ACACA-228ENST00000613146 ERCC6Q03468 1493 aa11.49□□□□□ -0.57
ACACA-228ENST00000613146 FHOD3Q2V2M9 1422 aa11.47□□□□□ -0.57
ACACA-228ENST00000613146 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.57
ACACA-228ENST00000613146 ARHGAP35Q9NRY4 1499 aa11.44□□□□□ -0.58
ACACA-228ENST00000613146 DNMBPQ6XZF7 1577 aa11.44□□□□□ -0.58
ACACA-228ENST00000613146 LAMC3Q9Y6N6 1575 aa11.42□□□□□ -0.58
ACACA-228ENST00000613146 GAPVD1Q14C86 1478 aa11.41□□□□□ -0.58
ACACA-228ENST00000613146 ZEB1P37275 1124 aaPredicted RBP11.41□□□□□ -0.58
ACACA-228ENST00000613146 ZNF608Q9ULD9 1512 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms