RNA–Protein interactions for RNA: ENST00000611855.4

CDH4-202, Transcript of cadherin 4, humanhuman

TSL 5 BASIC

Gene CDH4, Length 3,304 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-202ENST00000611855 NISCHQ9Y2I1 1504 aa21.19■□□□□ 0.98
CDH4-202ENST00000611855 SHROOM4Q9ULL8 1493 aa19.02■□□□□ 0.64
CDH4-202ENST00000611855 SUPT5HO00267 1087 aaKnown RBP18.84■□□□□ 0.61
CDH4-202ENST00000611855 HRCP23327 699 aa18.51■□□□□ 0.55
CDH4-202ENST00000611855 PPARGC1BQ86YN6 1023 aaKnown RBP18.37■□□□□ 0.53
CDH4-202ENST00000611855 PCGF6Q9BYE7 350 aa18.37■□□□□ 0.53
CDH4-202ENST00000611855 MYO15BQ96JP2 1530 aa18.34■□□□□ 0.53
CDH4-202ENST00000611855 CHIC1Q5VXU3 224 aa18.26■□□□□ 0.51
CDH4-202ENST00000611855 DCAF8L2P0C7V8 631 aa18.18■□□□□ 0.5
CDH4-202ENST00000611855 LOC105371045A0A1W2PR82 267 aa17.99■□□□□ 0.47
CDH4-202ENST00000611855 ZCCHC6Q5VYS8 1495 aaKnown RBP17.96■□□□□ 0.47
CDH4-202ENST00000611855 PELP1Q8IZL8 1130 aaKnown RBP17.9■□□□□ 0.46
CDH4-202ENST00000611855 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
CDH4-202ENST00000611855 SCAF1Q9H7N4 1312 aaKnown RBP17.64■□□□□ 0.41
CDH4-202ENST00000611855 TRIM26Q12899 539 aaPredicted RBP17.64■□□□□ 0.41
CDH4-202ENST00000611855 EHMT2Q96KQ7 1210 aa17.59■□□□□ 0.41
CDH4-202ENST00000611855 CCDC180Q9P1Z9 1646 aa17.54■□□□□ 0.4
CDH4-202ENST00000611855 FAM9AQ8IZU1 332 aaPredicted RBP17.51■□□□□ 0.39
CDH4-202ENST00000611855 TRIM41Q8WV44 630 aa17.32■□□□□ 0.36
CDH4-202ENST00000611855 ZEB1P37275 1124 aaPredicted RBP17.31■□□□□ 0.36
CDH4-202ENST00000611855 ABCC9O60706 1549 aa17.17■□□□□ 0.34
CDH4-202ENST00000611855 MYT1Q01538 1121 aa17.17■□□□□ 0.34
CDH4-202ENST00000611855 NEUROD1Q13562 356 aa17.17■□□□□ 0.34
CDH4-202ENST00000611855 ACIN1Q9UKV3 1341 aaKnown RBP17.14■□□□□ 0.33
CDH4-202ENST00000611855 GTF3C3Q9Y5Q9 886 aa17.13■□□□□ 0.33
CDH4-202ENST00000611855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.13■□□□□ 0.33
CDH4-202ENST00000611855 TTBK1Q5TCY1 1321 aaPredicted RBP17.09■□□□□ 0.33
CDH4-202ENST00000611855 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
CDH4-202ENST00000611855 CCER1Q8TC90 406 aaPredicted RBP17.03■□□□□ 0.32
CDH4-202ENST00000611855 RB1CC1Q8TDY2 1594 aa17.01■□□□□ 0.31
CDH4-202ENST00000611855 SCRIBQ14160 1630 aa16.99■□□□□ 0.31
CDH4-202ENST00000611855 CENPBP07199 599 aaPredicted RBP16.97■□□□□ 0.31
CDH4-202ENST00000611855 DIEXFQ68CQ4 756 aaKnown RBP16.88■□□□□ 0.29
CDH4-202ENST00000611855 YTHDC1Q96MU7 727 aaKnown RBP16.86■□□□□ 0.29
CDH4-202ENST00000611855 CECR2Q9BXF3 1484 aa16.75■□□□□ 0.27
CDH4-202ENST00000611855 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.26
CDH4-202ENST00000611855 WIZO95785 1651 aa16.59■□□□□ 0.25
CDH4-202ENST00000611855 ZNF316A6NFI3 1004 aaPredicted RBP16.54■□□□□ 0.24
CDH4-202ENST00000611855 UBTFP17480 764 aaKnown RBP16.52■□□□□ 0.24
CDH4-202ENST00000611855 HNRNPUL2Q1KMD3 747 aaKnown RBP16.51■□□□□ 0.23
CDH4-202ENST00000611855 MIER1Q8N108 512 aa16.5■□□□□ 0.23
CDH4-202ENST00000611855 ABCC8Q09428 1581 aa16.5■□□□□ 0.23
CDH4-202ENST00000611855 CEP162Q5TB80 1403 aa16.49■□□□□ 0.23
CDH4-202ENST00000611855 CCDC88BA6NC98 1476 aa16.47■□□□□ 0.23
CDH4-202ENST00000611855 PABPN1Q86U42 306 aaKnown RBP eCLIP16.44■□□□□ 0.22
CDH4-202ENST00000611855 SOGA1O94964 1423 aa16.44■□□□□ 0.22
CDH4-202ENST00000611855 NACADO15069 1562 aa16.43■□□□□ 0.22
CDH4-202ENST00000611855 RANGAP1P46060 587 aaPredicted RBP16.41■□□□□ 0.22
CDH4-202ENST00000611855 RUSC2Q8N2Y8 1516 aa16.37■□□□□ 0.21
CDH4-202ENST00000611855 WRNQ14191 1432 aaPredicted RBP eCLIP16.35■□□□□ 0.21
CDH4-202ENST00000611855 CSRNP3Q8WYN3 585 aa16.34■□□□□ 0.21
CDH4-202ENST00000611855 BAZ1AQ9NRL2 1556 aaPredicted RBP16.31■□□□□ 0.2
CDH4-202ENST00000611855 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
CDH4-202ENST00000611855 BCL11AQ9H165 835 aa16.3■□□□□ 0.2
CDH4-202ENST00000611855 TNIKQ9UKE5 1360 aa16.3■□□□□ 0.2
CDH4-202ENST00000611855 ANP32EQ9BTT0 268 aa16.2■□□□□ 0.18
CDH4-202ENST00000611855 SUPT16HQ9Y5B9 1047 aaKnown RBP16.18■□□□□ 0.18
CDH4-202ENST00000611855 APLP2Q06481 763 aa16.17■□□□□ 0.18
CDH4-202ENST00000611855 GOLGA3Q08378 1498 aa16.14■□□□□ 0.17
CDH4-202ENST00000611855 TOP2AP11388 1531 aaKnown RBP16.14■□□□□ 0.17
CDH4-202ENST00000611855 SMARCA2P51531 1590 aa16.14■□□□□ 0.17
CDH4-202ENST00000611855 TSHZ2Q9NRE2 1034 aa16.14■□□□□ 0.17
CDH4-202ENST00000611855 BCANQ96GW7 911 aa16.11■□□□□ 0.17
CDH4-202ENST00000611855 CLIP1P30622 1438 aa16.09■□□□□ 0.17
CDH4-202ENST00000611855 EEA1Q15075 1411 aa16.05■□□□□ 0.16
CDH4-202ENST00000611855 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
CDH4-202ENST00000611855 ITGAEP38570 1179 aa16.01■□□□□ 0.15
CDH4-202ENST00000611855 KCNH8Q96L42 1107 aa16■□□□□ 0.15
CDH4-202ENST00000611855 UNC13AQ9UPW8 1703 aa15.98■□□□□ 0.15
CDH4-202ENST00000611855 VPS8Q8N3P4 1428 aa15.98■□□□□ 0.15
CDH4-202ENST00000611855 CEP164Q9UPV0 1460 aa15.97■□□□□ 0.15
CDH4-202ENST00000611855 RAPGEF2Q9Y4G8 1499 aa15.96■□□□□ 0.14
CDH4-202ENST00000611855 DHX57Q6P158 1386 aaKnown RBP15.93■□□□□ 0.14
CDH4-202ENST00000611855 KANK4Q5T7N3 995 aaPredicted RBP15.93■□□□□ 0.14
CDH4-202ENST00000611855 SYNJ1O43426 1573 aa15.92■□□□□ 0.14
CDH4-202ENST00000611855 BICRAQ9NZM4 1560 aa15.91■□□□□ 0.14
CDH4-202ENST00000611855 CLSPNQ9HAW4 1339 aa15.89■□□□□ 0.13
CDH4-202ENST00000611855 FKBP8Q14318 412 aa15.86■□□□□ 0.13
CDH4-202ENST00000611855 KIF21BO75037 1637 aa15.86■□□□□ 0.13
CDH4-202ENST00000611855 HIRIP3Q9BW71 556 aaPredicted RBP15.8■□□□□ 0.12
CDH4-202ENST00000611855 DDX10Q13206 875 aaKnown RBP15.78■□□□□ 0.12
CDH4-202ENST00000611855 RBM19Q9Y4C8 960 aaKnown RBP15.78■□□□□ 0.12
CDH4-202ENST00000611855 BAZ1BQ9UIG0 1483 aaKnown RBP15.74■□□□□ 0.11
CDH4-202ENST00000611855 NEFLP07196 543 aa15.72■□□□□ 0.11
CDH4-202ENST00000611855 TRIM52Q96A61 297 aa15.72■□□□□ 0.11
CDH4-202ENST00000611855 SIN3AQ96ST3 1273 aa15.71■□□□□ 0.11
CDH4-202ENST00000611855 ARAP1Q96P48 1450 aa15.71■□□□□ 0.11
CDH4-202ENST00000611855 ERICH6Q7L0X2 663 aa15.7■□□□□ 0.1
CDH4-202ENST00000611855 CCNB3Q8WWL7 1395 aa15.66■□□□□ 0.1
CDH4-202ENST00000611855 RAB3GAP2Q9H2M9 1393 aa15.65■□□□□ 0.1
CDH4-202ENST00000611855 PRKCSHP14314 528 aaPredicted RBP15.63■□□□□ 0.09
CDH4-202ENST00000611855 FAM50AQ14320 339 aaKnown RBP15.63■□□□□ 0.09
CDH4-202ENST00000611855 ATP1B4Q9UN42 357 aaPredicted RBP15.63■□□□□ 0.09
CDH4-202ENST00000611855 MSH5O43196 834 aa15.62■□□□□ 0.09
CDH4-202ENST00000611855 RRBP1Q9P2E9 1410 aaKnown RBP15.6■□□□□ 0.09
CDH4-202ENST00000611855 ATAD2BQ9ULI0 1458 aa15.59■□□□□ 0.09
CDH4-202ENST00000611855 IRX6P78412 446 aaPredicted RBP15.58■□□□□ 0.08
CDH4-202ENST00000611855 P3H3Q8IVL6 736 aa15.56■□□□□ 0.08
CDH4-202ENST00000611855 PRXQ9BXM0 1461 aa15.56■□□□□ 0.08
CDH4-202ENST00000611855 WDR97A6NE52 1622 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms