RNA–Protein interactions for RNA: ENST00000609293.1

LINC01990-201, Transcript of long intergenic non-protein coding RNA 1990, humanhuman

TSL 1 (best) BASIC

Gene LINC01990, Length 1,487 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01990-201ENST00000609293 AEBP2Q6ZN18 517 aaPredicted RBP31.61■■■□□ 2.65
LINC01990-201ENST00000609293 CHIC1Q5VXU3 224 aa30.11■■■□□ 2.41
LINC01990-201ENST00000609293 SENP3Q9H4L4 574 aaPredicted RBP27.15■■□□□ 1.94
LINC01990-201ENST00000609293 PHF23Q9BUL5 403 aaPredicted RBP26.73■■□□□ 1.87
LINC01990-201ENST00000609293 POTEDQ86YR6 584 aa25.46■■□□□ 1.67
LINC01990-201ENST00000609293 FOXD1Q16676 465 aa25.2■■□□□ 1.62
LINC01990-201ENST00000609293 PLPPR3Q6T4P5 718 aa24.13■■□□□ 1.45
LINC01990-201ENST00000609293 MSH5O43196 834 aa24■■□□□ 1.43
LINC01990-201ENST00000609293 PIAS4Q8N2W9 510 aaPredicted RBP23.6■■□□□ 1.37
LINC01990-201ENST00000609293 PPP6R1Q9UPN7 881 aa23.48■■□□□ 1.35
LINC01990-201ENST00000609293 ADRA2BP18089 450 aa23.43■■□□□ 1.34
LINC01990-201ENST00000609293 SCAF1Q9H7N4 1312 aaKnown RBP21.67■■□□□ 1.06
LINC01990-201ENST00000609293 MAPK8IP2Q13387 824 aaPredicted RBP21.51■■□□□ 1.03
LINC01990-201ENST00000609293 DMRT2Q9Y5R5 561 aa21.48■■□□□ 1.03
LINC01990-201ENST00000609293 CACNB1Q02641 598 aaPredicted RBP21.29■■□□□ 1
LINC01990-201ENST00000609293 PPP4R3CPQ6ZMV5 832 aa21.08■□□□□ 0.97
LINC01990-201ENST00000609293 CNKSR2Q8WXI2 1034 aa20.75■□□□□ 0.91
LINC01990-201ENST00000609293 HOXD11P31277 338 aaPredicted RBP20.69■□□□□ 0.9
LINC01990-201ENST00000609293 DCAF8L1A6NGE4 600 aa20.63■□□□□ 0.89
LINC01990-201ENST00000609293 RNF216Q9NWF9 866 aaPredicted RBP20.56■□□□□ 0.88
LINC01990-201ENST00000609293 NCBP3Q53F19 620 aaKnown RBP20.39■□□□□ 0.85
LINC01990-201ENST00000609293 RNF39Q9H2S5 420 aa20.33■□□□□ 0.85
LINC01990-201ENST00000609293 DNAJC5BQ9UF47 199 aa20.07■□□□□ 0.8
LINC01990-201ENST00000609293 C1QBPQ07021 282 aaKnown RBP19.99■□□□□ 0.79
LINC01990-201ENST00000609293 NPM3O75607 178 aaKnown RBP19.93■□□□□ 0.78
LINC01990-201ENST00000609293 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.76■□□□□ 0.75
LINC01990-201ENST00000609293 POTEHQ6S545 545 aa19.72■□□□□ 0.75
LINC01990-201ENST00000609293 KCNA4P22459 653 aa19.49■□□□□ 0.71
LINC01990-201ENST00000609293 U3KPZ7 1027 aaPredicted RBP19.25■□□□□ 0.67
LINC01990-201ENST00000609293 NISCHQ9Y2I1 1504 aa19.24■□□□□ 0.67
LINC01990-201ENST00000609293 CAPN15O75808 1086 aa19.02■□□□□ 0.63
LINC01990-201ENST00000609293 SLC4A2P04920 1241 aa19■□□□□ 0.63
LINC01990-201ENST00000609293 APLP2Q06481 763 aa18.96■□□□□ 0.63
LINC01990-201ENST00000609293 SPINK5Q9NQ38 1064 aaPredicted RBP18.95■□□□□ 0.62
LINC01990-201ENST00000609293 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
LINC01990-201ENST00000609293 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
LINC01990-201ENST00000609293 DSG3P32926 999 aa18.85■□□□□ 0.61
LINC01990-201ENST00000609293 ZNF219Q9P2Y4 722 aaPredicted RBP18.73■□□□□ 0.59
LINC01990-201ENST00000609293 SAMD1Q6SPF0 538 aaPredicted RBP18.72■□□□□ 0.59
LINC01990-201ENST00000609293 TRHP20396 242 aaPredicted RBP18.69■□□□□ 0.58
LINC01990-201ENST00000609293 MYCNP04198 464 aaPredicted RBP18.52■□□□□ 0.56
LINC01990-201ENST00000609293 ABCB7O75027 752 aa18.51■□□□□ 0.55
LINC01990-201ENST00000609293 SLC4A1APQ9BWU0 796 aaKnown RBP18.49■□□□□ 0.55
LINC01990-201ENST00000609293 FOXD4L1Q9NU39 408 aa18.3■□□□□ 0.52
LINC01990-201ENST00000609293 POLA2Q14181 598 aa18.18■□□□□ 0.5
LINC01990-201ENST00000609293 RBM42Q9BTD8 480 aaKnown RBP18.14■□□□□ 0.5
LINC01990-201ENST00000609293 ZBTB12Q9Y330 459 aaPredicted RBP17.95■□□□□ 0.46
LINC01990-201ENST00000609293 ATF5Q9Y2D1 282 aaPredicted RBP17.94■□□□□ 0.46
LINC01990-201ENST00000609293 SP7Q8TDD2 431 aaPredicted RBP17.91■□□□□ 0.46
LINC01990-201ENST00000609293 CHRDL2Q6WN34 429 aa17.89■□□□□ 0.45
LINC01990-201ENST00000609293 ZBTB22O15209 634 aa17.85■□□□□ 0.45
LINC01990-201ENST00000609293 ATXN8OSP0DMR3 200 aa17.8■□□□□ 0.44
LINC01990-201ENST00000609293 ABCC9O60706 1549 aa17.67■□□□□ 0.42
LINC01990-201ENST00000609293 AKT1S1Q96B36 256 aa17.66■□□□□ 0.42
LINC01990-201ENST00000609293 OSCARQ8IYS5 282 aa17.56■□□□□ 0.4
LINC01990-201ENST00000609293 CCDC180Q9P1Z9 1646 aa17.47■□□□□ 0.39
LINC01990-201ENST00000609293 FBLN2P98095 1184 aa17.46■□□□□ 0.39
LINC01990-201ENST00000609293 REM2Q8IYK8 340 aaPredicted RBP17.44■□□□□ 0.38
LINC01990-201ENST00000609293 SPDYE2BA6NHP3 402 aa17.31■□□□□ 0.36
LINC01990-201ENST00000609293 SPDYE6P0CI01 402 aa17.31■□□□□ 0.36
LINC01990-201ENST00000609293 SPDYE2Q495Y8 402 aa17.31■□□□□ 0.36
LINC01990-201ENST00000609293 PITPNM1O00562 1244 aa17.23■□□□□ 0.35
LINC01990-201ENST00000609293 HAX1O00165 279 aa17.19■□□□□ 0.34
LINC01990-201ENST00000609293 PIP4P2Q8N4L2 257 aa17.19■□□□□ 0.34
LINC01990-201ENST00000609293 MKRN4PQ13434 485 aaPredicted RBP17.13■□□□□ 0.33
LINC01990-201ENST00000609293 FXR2P51116 673 aaKnown RBP eCLIP17.11■□□□□ 0.33
LINC01990-201ENST00000609293 ZNF692Q9BU19 519 aaPredicted RBP17.09■□□□□ 0.33
LINC01990-201ENST00000609293 CSRNP3Q8WYN3 585 aa17.07■□□□□ 0.32
LINC01990-201ENST00000609293 SPDYE1Q8NFV5 336 aaPredicted RBP17.04■□□□□ 0.32
LINC01990-201ENST00000609293 SSUH2Q9Y2M2 353 aa17.02■□□□□ 0.32
LINC01990-201ENST00000609293 CLEC11AQ9Y240 323 aa16.96■□□□□ 0.31
LINC01990-201ENST00000609293 EHMT2Q96KQ7 1210 aa16.86■□□□□ 0.29
LINC01990-201ENST00000609293 EVX2Q03828 476 aa16.85■□□□□ 0.29
LINC01990-201ENST00000609293 PRKAR2AP13861 404 aaKnown RBP16.82■□□□□ 0.28
LINC01990-201ENST00000609293 PABPN1Q86U42 306 aaKnown RBP eCLIP16.8■□□□□ 0.28
LINC01990-201ENST00000609293 LHX8Q68G74 356 aa16.77■□□□□ 0.28
LINC01990-201ENST00000609293 RB1CC1Q8TDY2 1594 aa16.73■□□□□ 0.27
LINC01990-201ENST00000609293 PRR29P0C7W0 189 aa16.72■□□□□ 0.27
LINC01990-201ENST00000609293 PLSCR2Q9NRY7 297 aa16.69■□□□□ 0.26
LINC01990-201ENST00000609293 C19orf67A6NJJ6 358 aa16.56■□□□□ 0.24
LINC01990-201ENST00000609293 CHADLQ6NUI6 762 aa16.55■□□□□ 0.24
LINC01990-201ENST00000609293 NACADO15069 1562 aa16.53■□□□□ 0.24
LINC01990-201ENST00000609293 STAG3Q9UJ98 1225 aa16.46■□□□□ 0.23
LINC01990-201ENST00000609293 GABBR2O75899 941 aa16.45■□□□□ 0.22
LINC01990-201ENST00000609293 UNC13AQ9UPW8 1703 aa16.43■□□□□ 0.22
LINC01990-201ENST00000609293 SPDYE4A6NLX3 237 aa16.42■□□□□ 0.22
LINC01990-201ENST00000609293 FARP1Q9Y4F1 1045 aaPredicted RBP16.38■□□□□ 0.21
LINC01990-201ENST00000609293 DCAF8L2P0C7V8 631 aa16.35■□□□□ 0.21
LINC01990-201ENST00000609293 CD44P16070 742 aaKnown RBP16.29■□□□□ 0.2
LINC01990-201ENST00000609293 CLCN6P51797 869 aa16.23■□□□□ 0.19
LINC01990-201ENST00000609293 BICRAQ9NZM4 1560 aa16.23■□□□□ 0.19
LINC01990-201ENST00000609293 CREBZFQ9NS37 354 aa16.2■□□□□ 0.18
LINC01990-201ENST00000609293 MYO15BQ96JP2 1530 aa16.18■□□□□ 0.18
LINC01990-201ENST00000609293 POTEIP0CG38 1075 aa16.08■□□□□ 0.16
LINC01990-201ENST00000609293 ZRANB1Q9UGI0 708 aa16.07■□□□□ 0.16
LINC01990-201ENST00000609293 NPM1P06748 294 aaKnown RBP eCLIP16.05■□□□□ 0.16
LINC01990-201ENST00000609293 PAK3O75914 559 aaPredicted RBP16.04■□□□□ 0.16
LINC01990-201ENST00000609293 ZNF579Q8NAF0 562 aaKnown RBP16.04■□□□□ 0.16
LINC01990-201ENST00000609293 SHROOM4Q9ULL8 1493 aa15.99■□□□□ 0.15
LINC01990-201ENST00000609293 CC2D2AQ9P2K1 1620 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms