RNA–Protein interactions for RNA: ENST00000607388.1

RPF2-204, Transcript of ribosome production factor 2 homolog, humanhuman

TSL 1 (best)

Gene RPF2, Length 3,621 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPF2-204ENST00000607388 NISCHQ9Y2I1 1504 aa12.26□□□□□ -0.45
RPF2-204ENST00000607388 SHROOM4Q9ULL8 1493 aa11.41□□□□□ -0.58
RPF2-204ENST00000607388 SUPT5HO00267 1087 aaKnown RBP11.36□□□□□ -0.59
RPF2-204ENST00000607388 DCAF8L2P0C7V8 631 aa11.33□□□□□ -0.6
RPF2-204ENST00000607388 EHMT2Q96KQ7 1210 aa10.99□□□□□ -0.65
RPF2-204ENST00000607388 PCGF6Q9BYE7 350 aa10.9□□□□□ -0.66
RPF2-204ENST00000607388 PPARGC1BQ86YN6 1023 aaKnown RBP10.8□□□□□ -0.68
RPF2-204ENST00000607388 ABCC9O60706 1549 aa10.73□□□□□ -0.69
RPF2-204ENST00000607388 FAM9AQ8IZU1 332 aaPredicted RBP10.69□□□□□ -0.7
RPF2-204ENST00000607388 LOC105371045A0A1W2PR82 267 aa10.68□□□□□ -0.7
RPF2-204ENST00000607388 TTBK1Q5TCY1 1321 aaPredicted RBP10.59□□□□□ -0.71
RPF2-204ENST00000607388 CHIC1Q5VXU3 224 aa10.57□□□□□ -0.72
RPF2-204ENST00000607388 HRCP23327 699 aa10.55□□□□□ -0.72
RPF2-204ENST00000607388 CCDC180Q9P1Z9 1646 aa10.53□□□□□ -0.72
RPF2-204ENST00000607388 MYO15BQ96JP2 1530 aa10.4□□□□□ -0.74
RPF2-204ENST00000607388 TRIM41Q8WV44 630 aa10.28□□□□□ -0.76
RPF2-204ENST00000607388 PABPN1Q86U42 306 aaKnown RBP eCLIP10.26□□□□□ -0.77
RPF2-204ENST00000607388 RANGAP1P46060 587 aaPredicted RBP10.23□□□□□ -0.77
RPF2-204ENST00000607388 TRIM26Q12899 539 aaPredicted RBP10.2□□□□□ -0.78
RPF2-204ENST00000607388 ZCCHC6Q5VYS8 1495 aaKnown RBP10.2□□□□□ -0.78
RPF2-204ENST00000607388 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.18□□□□□ -0.78
RPF2-204ENST00000607388 YTHDC1Q96MU7 727 aaKnown RBP10.16□□□□□ -0.78
RPF2-204ENST00000607388 CCER1Q8TC90 406 aaPredicted RBP10.15□□□□□ -0.78
RPF2-204ENST00000607388 SLC24A1O60721 1099 aa10.09□□□□□ -0.79
RPF2-204ENST00000607388 SCRIBQ14160 1630 aa10.05□□□□□ -0.8
RPF2-204ENST00000607388 RB1CC1Q8TDY2 1594 aa10.04□□□□□ -0.8
RPF2-204ENST00000607388 NACADO15069 1562 aa10□□□□□ -0.81
RPF2-204ENST00000607388 SCAF1Q9H7N4 1312 aaKnown RBP9.99□□□□□ -0.81
RPF2-204ENST00000607388 UBTFP17480 764 aaKnown RBP9.96□□□□□ -0.81
RPF2-204ENST00000607388 HNRNPUL2Q1KMD3 747 aaKnown RBP9.94□□□□□ -0.82
RPF2-204ENST00000607388 ZEB1P37275 1124 aaPredicted RBP9.93□□□□□ -0.82
RPF2-204ENST00000607388 GTF3C3Q9Y5Q9 886 aa9.91□□□□□ -0.82
RPF2-204ENST00000607388 NEUROD1Q13562 356 aa9.89□□□□□ -0.83
RPF2-204ENST00000607388 DCAF1Q9Y4B6 1507 aa9.89□□□□□ -0.83
RPF2-204ENST00000607388 DIEXFQ68CQ4 756 aaKnown RBP9.88□□□□□ -0.83
RPF2-204ENST00000607388 MYT1Q01538 1121 aa9.83□□□□□ -0.84
RPF2-204ENST00000607388 CENPBP07199 599 aaPredicted RBP9.81□□□□□ -0.84
RPF2-204ENST00000607388 ITGAEP38570 1179 aa9.81□□□□□ -0.84
RPF2-204ENST00000607388 DNAJC5BQ9UF47 199 aa9.77□□□□□ -0.85
RPF2-204ENST00000607388 ACIN1Q9UKV3 1341 aaKnown RBP9.77□□□□□ -0.85
RPF2-204ENST00000607388 APLP2Q06481 763 aa9.76□□□□□ -0.85
RPF2-204ENST00000607388 CECR2Q9BXF3 1484 aa9.74□□□□□ -0.85
RPF2-204ENST00000607388 PELP1Q8IZL8 1130 aaKnown RBP9.72□□□□□ -0.85
RPF2-204ENST00000607388 BICRAQ9NZM4 1560 aa9.72□□□□□ -0.85
RPF2-204ENST00000607388 UNC13AQ9UPW8 1703 aa9.72□□□□□ -0.85
RPF2-204ENST00000607388 ATP1B4Q9UN42 357 aaPredicted RBP9.71□□□□□ -0.85
RPF2-204ENST00000607388 RSF1Q96T23 1441 aaPredicted RBP9.67□□□□□ -0.86
RPF2-204ENST00000607388 BCANQ96GW7 911 aa9.67□□□□□ -0.86
RPF2-204ENST00000607388 MIER1Q8N108 512 aa9.65□□□□□ -0.86
RPF2-204ENST00000607388 CNGB1Q14028 1251 aaPredicted RBP9.62□□□□□ -0.87
RPF2-204ENST00000607388 ZNF316A6NFI3 1004 aaPredicted RBP9.61□□□□□ -0.87
RPF2-204ENST00000607388 MROH2BQ7Z745 1585 aa9.57□□□□□ -0.88
RPF2-204ENST00000607388 HIRIP3Q9BW71 556 aaPredicted RBP9.56□□□□□ -0.88
RPF2-204ENST00000607388 CSRNP3Q8WYN3 585 aa9.55□□□□□ -0.88
RPF2-204ENST00000607388 EIF4G1Q04637 1599 aaKnown RBP9.52□□□□□ -0.88
RPF2-204ENST00000607388 P3H3Q8IVL6 736 aa9.49□□□□□ -0.89
RPF2-204ENST00000607388 SOGA1O94964 1423 aa9.49□□□□□ -0.89
RPF2-204ENST00000607388 CC2D2AQ9P2K1 1620 aa9.47□□□□□ -0.89
RPF2-204ENST00000607388 ABCC8Q09428 1581 aa9.46□□□□□ -0.89
RPF2-204ENST00000607388 BAZ1AQ9NRL2 1556 aaPredicted RBP9.46□□□□□ -0.89
RPF2-204ENST00000607388 WIZO95785 1651 aa9.45□□□□□ -0.9
RPF2-204ENST00000607388 CEP162Q5TB80 1403 aa9.44□□□□□ -0.9
RPF2-204ENST00000607388 ATAD2BQ9ULI0 1458 aa9.44□□□□□ -0.9
RPF2-204ENST00000607388 SENP3-EIF4A1A0A087X0R7 540 aa9.44□□□□□ -0.9
RPF2-204ENST00000607388 SMARCA4P51532 1647 aa9.44□□□□□ -0.9
RPF2-204ENST00000607388 CCDC88BA6NC98 1476 aa9.43□□□□□ -0.9
RPF2-204ENST00000607388 BAZ1BQ9UIG0 1483 aaKnown RBP9.43□□□□□ -0.9
RPF2-204ENST00000607388 FAM50AQ14320 339 aaKnown RBP9.42□□□□□ -0.9
RPF2-204ENST00000607388 RUSC2Q8N2Y8 1516 aa9.42□□□□□ -0.9
RPF2-204ENST00000607388 KCNH8Q96L42 1107 aa9.42□□□□□ -0.9
RPF2-204ENST00000607388 ERICH6Q7L0X2 663 aa9.41□□□□□ -0.9
RPF2-204ENST00000607388 TRIM52Q96A61 297 aa9.4□□□□□ -0.9
RPF2-204ENST00000607388 DDX10Q13206 875 aaKnown RBP9.39□□□□□ -0.91
RPF2-204ENST00000607388 ARID3CA6NKF2 412 aa9.38□□□□□ -0.91
RPF2-204ENST00000607388 IRX6P78412 446 aaPredicted RBP9.37□□□□□ -0.91
RPF2-204ENST00000607388 POLR3GLQ9BT43 218 aa9.37□□□□□ -0.91
RPF2-204ENST00000607388 FKBP8Q14318 412 aa9.35□□□□□ -0.91
RPF2-204ENST00000607388 SMARCA2P51531 1590 aa9.32□□□□□ -0.92
RPF2-204ENST00000607388 KANK4Q5T7N3 995 aaPredicted RBP9.32□□□□□ -0.92
RPF2-204ENST00000607388 DAXXQ9UER7 740 aaPredicted RBP9.32□□□□□ -0.92
RPF2-204ENST00000607388 SIN3AQ96ST3 1273 aa9.32□□□□□ -0.92
RPF2-204ENST00000607388 NCAPD3P42695 1498 aa9.31□□□□□ -0.92
RPF2-204ENST00000607388 NEFLP07196 543 aa9.31□□□□□ -0.92
RPF2-204ENST00000607388 NESP48681 1621 aa9.3□□□□□ -0.92
RPF2-204ENST00000607388 PRKCSHP14314 528 aaPredicted RBP9.3□□□□□ -0.92
RPF2-204ENST00000607388 CLIP1P30622 1438 aa9.29□□□□□ -0.92
RPF2-204ENST00000607388 SUPT16HQ9Y5B9 1047 aaKnown RBP9.28□□□□□ -0.92
RPF2-204ENST00000607388 TNIKQ9UKE5 1360 aa9.24□□□□□ -0.93
RPF2-204ENST00000607388 TOP2AP11388 1531 aaKnown RBP9.23□□□□□ -0.93
RPF2-204ENST00000607388 ERCC6Q03468 1493 aa9.21□□□□□ -0.93
RPF2-204ENST00000607388 CHIC2Q9UKJ5 165 aa9.2□□□□□ -0.94
RPF2-204ENST00000607388 WRNQ14191 1432 aaPredicted RBP eCLIP9.2□□□□□ -0.94
RPF2-204ENST00000607388 ZNF326Q5BKZ1 582 aaKnown RBP9.2□□□□□ -0.94
RPF2-204ENST00000607388 CADPSQ9ULU8 1353 aa9.2□□□□□ -0.94
RPF2-204ENST00000607388 GOLGA3Q08378 1498 aa9.18□□□□□ -0.94
RPF2-204ENST00000607388 HMGXB3Q12766 1538 aa9.17□□□□□ -0.94
RPF2-204ENST00000607388 HNRNPUQ00839 825 aaKnown RBP eCLIP9.17□□□□□ -0.94
RPF2-204ENST00000607388 TSHZ2Q9NRE2 1034 aa9.17□□□□□ -0.94
RPF2-204ENST00000607388 ANP32CO43423 234 aa9.16□□□□□ -0.94
RPF2-204ENST00000607388 PEG3Q9GZU2 1588 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms