RNA–Protein interactions for RNA: ENST00000606299.1

CSNK1A1-209, Transcript of casein kinase 1 alpha 1, humanhuman

TSL 3 BASIC

Gene CSNK1A1, Length 1,075 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1A1-209ENST00000606299 AEBP2Q6ZN18 517 aaPredicted RBP36.72■■■■□ 3.47
CSNK1A1-209ENST00000606299 CHIC1Q5VXU3 224 aa35.43■■■■□ 3.26
CSNK1A1-209ENST00000606299 SENP3Q9H4L4 574 aaPredicted RBP31.38■■■□□ 2.61
CSNK1A1-209ENST00000606299 PHF23Q9BUL5 403 aaPredicted RBP31.03■■■□□ 2.56
CSNK1A1-209ENST00000606299 FOXD1Q16676 465 aa29.08■■■□□ 2.25
CSNK1A1-209ENST00000606299 PLPPR3Q6T4P5 718 aa28.57■■■□□ 2.16
CSNK1A1-209ENST00000606299 PPP6R1Q9UPN7 881 aa27.51■■□□□ 1.99
CSNK1A1-209ENST00000606299 ADRA2BP18089 450 aa27.47■■□□□ 1.99
CSNK1A1-209ENST00000606299 PIAS4Q8N2W9 510 aaPredicted RBP27.34■■□□□ 1.97
CSNK1A1-209ENST00000606299 MSH5O43196 834 aa27.14■■□□□ 1.94
CSNK1A1-209ENST00000606299 POTEDQ86YR6 584 aa25.54■■□□□ 1.68
CSNK1A1-209ENST00000606299 SCAF1Q9H7N4 1312 aaKnown RBP25.28■■□□□ 1.64
CSNK1A1-209ENST00000606299 PPP4R3CPQ6ZMV5 832 aa25.05■■□□□ 1.6
CSNK1A1-209ENST00000606299 MAPK8IP2Q13387 824 aaPredicted RBP25.04■■□□□ 1.6
CSNK1A1-209ENST00000606299 DMRT2Q9Y5R5 561 aa24.94■■□□□ 1.58
CSNK1A1-209ENST00000606299 CNKSR2Q8WXI2 1034 aa24.52■■□□□ 1.52
CSNK1A1-209ENST00000606299 NCBP3Q53F19 620 aaKnown RBP24.32■■□□□ 1.48
CSNK1A1-209ENST00000606299 HOXD11P31277 338 aaPredicted RBP24.22■■□□□ 1.47
CSNK1A1-209ENST00000606299 RNF216Q9NWF9 866 aaPredicted RBP24.18■■□□□ 1.46
CSNK1A1-209ENST00000606299 NPM3O75607 178 aaKnown RBP23.88■■□□□ 1.41
CSNK1A1-209ENST00000606299 KCNA4P22459 653 aa23.84■■□□□ 1.41
CSNK1A1-209ENST00000606299 DCAF8L1A6NGE4 600 aa23.8■■□□□ 1.4
CSNK1A1-209ENST00000606299 DNAJC5BQ9UF47 199 aa23.42■■□□□ 1.34
CSNK1A1-209ENST00000606299 RNF39Q9H2S5 420 aa23.16■■□□□ 1.3
CSNK1A1-209ENST00000606299 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.04■■□□□ 1.28
CSNK1A1-209ENST00000606299 CACNB1Q02641 598 aaPredicted RBP22.9■■□□□ 1.26
CSNK1A1-209ENST00000606299 C1QBPQ07021 282 aaKnown RBP22.89■■□□□ 1.25
CSNK1A1-209ENST00000606299 SLC4A2P04920 1241 aa22.66■■□□□ 1.22
CSNK1A1-209ENST00000606299 SLC4A1APQ9BWU0 796 aaKnown RBP22.65■■□□□ 1.22
CSNK1A1-209ENST00000606299 U3KPZ7 1027 aaPredicted RBP22.61■■□□□ 1.21
CSNK1A1-209ENST00000606299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.25■■□□□ 1.15
CSNK1A1-209ENST00000606299 HNRNPUL2Q1KMD3 747 aaKnown RBP22.25■■□□□ 1.15
CSNK1A1-209ENST00000606299 NISCHQ9Y2I1 1504 aa22.17■■□□□ 1.14
CSNK1A1-209ENST00000606299 APLP2Q06481 763 aa22.17■■□□□ 1.14
CSNK1A1-209ENST00000606299 FOXD4L1Q9NU39 408 aa22.17■■□□□ 1.14
CSNK1A1-209ENST00000606299 MYCNP04198 464 aaPredicted RBP22.16■■□□□ 1.14
CSNK1A1-209ENST00000606299 SAMD1Q6SPF0 538 aaPredicted RBP22.13■■□□□ 1.13
CSNK1A1-209ENST00000606299 SPINK5Q9NQ38 1064 aaPredicted RBP22.08■■□□□ 1.13
CSNK1A1-209ENST00000606299 CAPN15O75808 1086 aa22.05■■□□□ 1.12
CSNK1A1-209ENST00000606299 ZBTB22O15209 634 aa21.92■■□□□ 1.1
CSNK1A1-209ENST00000606299 ZNF219Q9P2Y4 722 aaPredicted RBP21.9■■□□□ 1.1
CSNK1A1-209ENST00000606299 DSG3P32926 999 aa21.82■■□□□ 1.08
CSNK1A1-209ENST00000606299 TRHP20396 242 aaPredicted RBP21.8■■□□□ 1.08
CSNK1A1-209ENST00000606299 ABCB7O75027 752 aa21.55■■□□□ 1.04
CSNK1A1-209ENST00000606299 ATXN8OSP0DMR3 200 aa21.5■■□□□ 1.03
CSNK1A1-209ENST00000606299 ATF5Q9Y2D1 282 aaPredicted RBP21.46■■□□□ 1.03
CSNK1A1-209ENST00000606299 CSRNP3Q8WYN3 585 aa21.35■■□□□ 1.01
CSNK1A1-209ENST00000606299 POLA2Q14181 598 aa21.34■■□□□ 1.01
CSNK1A1-209ENST00000606299 EHMT2Q96KQ7 1210 aa21.33■■□□□ 1.01
CSNK1A1-209ENST00000606299 ZBTB12Q9Y330 459 aaPredicted RBP21.1■□□□□ 0.97
CSNK1A1-209ENST00000606299 RBM42Q9BTD8 480 aaKnown RBP20.92■□□□□ 0.94
CSNK1A1-209ENST00000606299 FBLN2P98095 1184 aa20.73■□□□□ 0.91
CSNK1A1-209ENST00000606299 OSCARQ8IYS5 282 aa20.66■□□□□ 0.9
CSNK1A1-209ENST00000606299 MKRN4PQ13434 485 aaPredicted RBP20.55■□□□□ 0.88
CSNK1A1-209ENST00000606299 AKT1S1Q96B36 256 aa20.5■□□□□ 0.87
CSNK1A1-209ENST00000606299 SPDYE2BA6NHP3 402 aa20.44■□□□□ 0.86
CSNK1A1-209ENST00000606299 SPDYE6P0CI01 402 aa20.44■□□□□ 0.86
CSNK1A1-209ENST00000606299 SPDYE2Q495Y8 402 aa20.44■□□□□ 0.86
CSNK1A1-209ENST00000606299 REM2Q8IYK8 340 aaPredicted RBP20.25■□□□□ 0.83
CSNK1A1-209ENST00000606299 SSUH2Q9Y2M2 353 aa20.2■□□□□ 0.82
CSNK1A1-209ENST00000606299 ZNF692Q9BU19 519 aaPredicted RBP20.19■□□□□ 0.82
CSNK1A1-209ENST00000606299 CHRDL2Q6WN34 429 aa20.18■□□□□ 0.82
CSNK1A1-209ENST00000606299 POTEHQ6S545 545 aa20.14■□□□□ 0.81
CSNK1A1-209ENST00000606299 PITPNM1O00562 1244 aa20.03■□□□□ 0.8
CSNK1A1-209ENST00000606299 SPDYE1Q8NFV5 336 aaPredicted RBP19.95■□□□□ 0.78
CSNK1A1-209ENST00000606299 PABPN1Q86U42 306 aaKnown RBP eCLIP19.91■□□□□ 0.78
CSNK1A1-209ENST00000606299 SPDYE4A6NLX3 237 aa19.87■□□□□ 0.77
CSNK1A1-209ENST00000606299 PIP4P2Q8N4L2 257 aa19.79■□□□□ 0.76
CSNK1A1-209ENST00000606299 CLEC11AQ9Y240 323 aa19.79■□□□□ 0.76
CSNK1A1-209ENST00000606299 FXR2P51116 673 aaKnown RBP eCLIP19.77■□□□□ 0.76
CSNK1A1-209ENST00000606299 PRR29P0C7W0 189 aa19.58■□□□□ 0.72
CSNK1A1-209ENST00000606299 STAG3Q9UJ98 1225 aa19.56■□□□□ 0.72
CSNK1A1-209ENST00000606299 PROM2Q8N271 834 aa19.52■□□□□ 0.72
CSNK1A1-209ENST00000606299 PRKAR2AP13861 404 aaKnown RBP19.51■□□□□ 0.71
CSNK1A1-209ENST00000606299 CCDC180Q9P1Z9 1646 aa19.48■□□□□ 0.71
CSNK1A1-209ENST00000606299 FKBP8Q14318 412 aa19.35■□□□□ 0.69
CSNK1A1-209ENST00000606299 CHADLQ6NUI6 762 aa19.33■□□□□ 0.68
CSNK1A1-209ENST00000606299 HAX1O00165 279 aa19.27■□□□□ 0.68
CSNK1A1-209ENST00000606299 CREBZFQ9NS37 354 aa19.19■□□□□ 0.66
CSNK1A1-209ENST00000606299 FARP1Q9Y4F1 1045 aaPredicted RBP19.18■□□□□ 0.66
CSNK1A1-209ENST00000606299 SP7Q8TDD2 431 aaPredicted RBP19.13■□□□□ 0.65
CSNK1A1-209ENST00000606299 C19orf67A6NJJ6 358 aa19.12■□□□□ 0.65
CSNK1A1-209ENST00000606299 EVX2Q03828 476 aa18.99■□□□□ 0.63
CSNK1A1-209ENST00000606299 MNX1P50219 401 aaPredicted RBP18.94■□□□□ 0.62
CSNK1A1-209ENST00000606299 NPM1P06748 294 aaKnown RBP eCLIP18.93■□□□□ 0.62
CSNK1A1-209ENST00000606299 CD44P16070 742 aaKnown RBP18.93■□□□□ 0.62
CSNK1A1-209ENST00000606299 PLEKHG5O94827 1062 aa18.92■□□□□ 0.62
CSNK1A1-209ENST00000606299 FBXO3Q9UK99 471 aa18.91■□□□□ 0.62
CSNK1A1-209ENST00000606299 MIER1Q8N108 512 aa18.87■□□□□ 0.61
CSNK1A1-209ENST00000606299 PLCD3Q8N3E9 789 aa18.81■□□□□ 0.6
CSNK1A1-209ENST00000606299 PAK3O75914 559 aaPredicted RBP18.76■□□□□ 0.59
CSNK1A1-209ENST00000606299 ZBTB47Q9UFB7 747 aaPredicted RBP18.74■□□□□ 0.59
CSNK1A1-209ENST00000606299 CLCN6P51797 869 aa18.72■□□□□ 0.59
CSNK1A1-209ENST00000606299 ZNF579Q8NAF0 562 aaKnown RBP18.72■□□□□ 0.59
CSNK1A1-209ENST00000606299 ZRANB1Q9UGI0 708 aa18.72■□□□□ 0.59
CSNK1A1-209ENST00000606299 GABBR2O75899 941 aa18.67■□□□□ 0.58
CSNK1A1-209ENST00000606299 VASPP50552 380 aaPredicted RBP18.63■□□□□ 0.57
CSNK1A1-209ENST00000606299 ZCCHC6Q5VYS8 1495 aaKnown RBP18.63■□□□□ 0.57
CSNK1A1-209ENST00000606299 RASEFQ8IZ41 740 aa18.5■□□□□ 0.55
CSNK1A1-209ENST00000606299 TSPYL2Q9H2G4 693 aaPredicted RBP18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 1315.8 ms