RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, humanhuman

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-208ENST00000584796 AEBP2Q6ZN18 517 aaPredicted RBP21.17■□□□□ 0.98
VAPA-208ENST00000584796 CHIC1Q5VXU3 224 aa20.24■□□□□ 0.83
VAPA-208ENST00000584796 SENP3Q9H4L4 574 aaPredicted RBP18.03■□□□□ 0.48
VAPA-208ENST00000584796 PHF23Q9BUL5 403 aaPredicted RBP17.8■□□□□ 0.44
VAPA-208ENST00000584796 FOXD1Q16676 465 aa16.79■□□□□ 0.28
VAPA-208ENST00000584796 PLPPR3Q6T4P5 718 aa16.22■□□□□ 0.19
VAPA-208ENST00000584796 PPP6R1Q9UPN7 881 aa15.8■□□□□ 0.12
VAPA-208ENST00000584796 ADRA2BP18089 450 aa15.74■□□□□ 0.11
VAPA-208ENST00000584796 PIAS4Q8N2W9 510 aaPredicted RBP15.7■□□□□ 0.1
VAPA-208ENST00000584796 MSH5O43196 834 aa15.66■□□□□ 0.1
VAPA-208ENST00000584796 POTEDQ86YR6 584 aa15.06■□□□□ 0
VAPA-208ENST00000584796 MAPK8IP2Q13387 824 aaPredicted RBP14.41□□□□□ -0.1
VAPA-208ENST00000584796 SCAF1Q9H7N4 1312 aaKnown RBP14.41□□□□□ -0.1
VAPA-208ENST00000584796 DMRT2Q9Y5R5 561 aa14.33□□□□□ -0.12
VAPA-208ENST00000584796 PPP4R3CPQ6ZMV5 832 aa14.23□□□□□ -0.13
VAPA-208ENST00000584796 CNKSR2Q8WXI2 1034 aa13.94□□□□□ -0.18
VAPA-208ENST00000584796 HOXD11P31277 338 aaPredicted RBP13.87□□□□□ -0.19
VAPA-208ENST00000584796 RNF216Q9NWF9 866 aaPredicted RBP13.78□□□□□ -0.2
VAPA-208ENST00000584796 NCBP3Q53F19 620 aaKnown RBP13.71□□□□□ -0.21
VAPA-208ENST00000584796 DCAF8L1A6NGE4 600 aa13.66□□□□□ -0.22
VAPA-208ENST00000584796 NPM3O75607 178 aaKnown RBP13.53□□□□□ -0.24
VAPA-208ENST00000584796 RNF39Q9H2S5 420 aa13.39□□□□□ -0.27
VAPA-208ENST00000584796 DNAJC5BQ9UF47 199 aa13.39□□□□□ -0.27
VAPA-208ENST00000584796 KCNA4P22459 653 aa13.38□□□□□ -0.27
VAPA-208ENST00000584796 CACNB1Q02641 598 aaPredicted RBP13.32□□□□□ -0.28
VAPA-208ENST00000584796 C1QBPQ07021 282 aaKnown RBP13.2□□□□□ -0.3
VAPA-208ENST00000584796 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.16□□□□□ -0.3
VAPA-208ENST00000584796 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
VAPA-208ENST00000584796 SLC4A2P04920 1241 aa12.9□□□□□ -0.34
VAPA-208ENST00000584796 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
VAPA-208ENST00000584796 SLC4A1APQ9BWU0 796 aaKnown RBP12.65□□□□□ -0.38
VAPA-208ENST00000584796 CAPN15O75808 1086 aa12.64□□□□□ -0.39
VAPA-208ENST00000584796 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.6□□□□□ -0.39
VAPA-208ENST00000584796 HNRNPUL2Q1KMD3 747 aaKnown RBP12.6□□□□□ -0.39
VAPA-208ENST00000584796 DSG3P32926 999 aa12.57□□□□□ -0.4
VAPA-208ENST00000584796 APLP2Q06481 763 aa12.57□□□□□ -0.4
VAPA-208ENST00000584796 SAMD1Q6SPF0 538 aaPredicted RBP12.54□□□□□ -0.4
VAPA-208ENST00000584796 MYCNP04198 464 aaPredicted RBP12.51□□□□□ -0.41
VAPA-208ENST00000584796 ZNF219Q9P2Y4 722 aaPredicted RBP12.48□□□□□ -0.41
VAPA-208ENST00000584796 TRHP20396 242 aaPredicted RBP12.45□□□□□ -0.42
VAPA-208ENST00000584796 FOXD4L1Q9NU39 408 aa12.45□□□□□ -0.42
VAPA-208ENST00000584796 ABCB7O75027 752 aa12.36□□□□□ -0.43
VAPA-208ENST00000584796 ZBTB22O15209 634 aa12.32□□□□□ -0.44
VAPA-208ENST00000584796 ATF5Q9Y2D1 282 aaPredicted RBP12.2□□□□□ -0.46
VAPA-208ENST00000584796 POLA2Q14181 598 aa12.18□□□□□ -0.46
VAPA-208ENST00000584796 ATXN8OSP0DMR3 200 aa12.08□□□□□ -0.48
VAPA-208ENST00000584796 RBM42Q9BTD8 480 aaKnown RBP11.99□□□□□ -0.49
VAPA-208ENST00000584796 ZBTB12Q9Y330 459 aaPredicted RBP11.97□□□□□ -0.49
VAPA-208ENST00000584796 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
VAPA-208ENST00000584796 POTEHQ6S545 545 aa11.82□□□□□ -0.52
VAPA-208ENST00000584796 OSCARQ8IYS5 282 aa11.79□□□□□ -0.52
VAPA-208ENST00000584796 AKT1S1Q96B36 256 aa11.74□□□□□ -0.53
VAPA-208ENST00000584796 EHMT2Q96KQ7 1210 aa11.73□□□□□ -0.53
VAPA-208ENST00000584796 FBLN2P98095 1184 aa11.7□□□□□ -0.54
VAPA-208ENST00000584796 MKRN4PQ13434 485 aaPredicted RBP11.67□□□□□ -0.54
VAPA-208ENST00000584796 CHRDL2Q6WN34 429 aa11.67□□□□□ -0.54
VAPA-208ENST00000584796 REM2Q8IYK8 340 aaPredicted RBP11.62□□□□□ -0.55
VAPA-208ENST00000584796 SPDYE2BA6NHP3 402 aa11.61□□□□□ -0.55
VAPA-208ENST00000584796 SPDYE6P0CI01 402 aa11.61□□□□□ -0.55
VAPA-208ENST00000584796 SPDYE2Q495Y8 402 aa11.61□□□□□ -0.55
VAPA-208ENST00000584796 PITPNM1O00562 1244 aa11.51□□□□□ -0.57
VAPA-208ENST00000584796 SSUH2Q9Y2M2 353 aa11.48□□□□□ -0.57
VAPA-208ENST00000584796 ZNF692Q9BU19 519 aaPredicted RBP11.46□□□□□ -0.57
VAPA-208ENST00000584796 PIP4P2Q8N4L2 257 aa11.43□□□□□ -0.58
VAPA-208ENST00000584796 FXR2P51116 673 aaKnown RBP eCLIP11.39□□□□□ -0.59
VAPA-208ENST00000584796 SPDYE1Q8NFV5 336 aaPredicted RBP11.36□□□□□ -0.59
VAPA-208ENST00000584796 PABPN1Q86U42 306 aaKnown RBP eCLIP11.3□□□□□ -0.6
VAPA-208ENST00000584796 CLEC11AQ9Y240 323 aa11.29□□□□□ -0.6
VAPA-208ENST00000584796 PRKAR2AP13861 404 aaKnown RBP11.19□□□□□ -0.62
VAPA-208ENST00000584796 SPDYE4A6NLX3 237 aa11.16□□□□□ -0.62
VAPA-208ENST00000584796 SP7Q8TDD2 431 aaPredicted RBP11.15□□□□□ -0.62
VAPA-208ENST00000584796 HAX1O00165 279 aa11.14□□□□□ -0.63
VAPA-208ENST00000584796 PRR29P0C7W0 189 aa11.14□□□□□ -0.63
VAPA-208ENST00000584796 CHADLQ6NUI6 762 aa11.08□□□□□ -0.64
VAPA-208ENST00000584796 EVX2Q03828 476 aa11.05□□□□□ -0.64
VAPA-208ENST00000584796 STAG3Q9UJ98 1225 aa11.03□□□□□ -0.64
VAPA-208ENST00000584796 C19orf67A6NJJ6 358 aa11.02□□□□□ -0.65
VAPA-208ENST00000584796 PROM2Q8N271 834 aa10.97□□□□□ -0.65
VAPA-208ENST00000584796 FARP1Q9Y4F1 1045 aaPredicted RBP10.96□□□□□ -0.65
VAPA-208ENST00000584796 CREBZFQ9NS37 354 aa10.93□□□□□ -0.66
VAPA-208ENST00000584796 CD44P16070 742 aaKnown RBP10.85□□□□□ -0.67
VAPA-208ENST00000584796 GABBR2O75899 941 aa10.8□□□□□ -0.68
VAPA-208ENST00000584796 MNX1P50219 401 aaPredicted RBP10.79□□□□□ -0.68
VAPA-208ENST00000584796 FKBP8Q14318 412 aa10.72□□□□□ -0.69
VAPA-208ENST00000584796 ZNF579Q8NAF0 562 aaKnown RBP10.72□□□□□ -0.69
VAPA-208ENST00000584796 NPM1P06748 294 aaKnown RBP eCLIP10.71□□□□□ -0.69
VAPA-208ENST00000584796 CLCN6P51797 869 aa10.71□□□□□ -0.69
VAPA-208ENST00000584796 ZRANB1Q9UGI0 708 aa10.71□□□□□ -0.69
VAPA-208ENST00000584796 PAK3O75914 559 aaPredicted RBP10.64□□□□□ -0.71
VAPA-208ENST00000584796 MIER1Q8N108 512 aa10.61□□□□□ -0.71
VAPA-208ENST00000584796 POTEIP0CG38 1075 aa10.59□□□□□ -0.71
VAPA-208ENST00000584796 PLEKHG5O94827 1062 aa10.58□□□□□ -0.72
VAPA-208ENST00000584796 PHF12Q96QT6 1004 aa10.57□□□□□ -0.72
VAPA-208ENST00000584796 GALR2O43603 387 aaPredicted RBP10.55□□□□□ -0.72
VAPA-208ENST00000584796 PLCD3Q8N3E9 789 aa10.54□□□□□ -0.72
VAPA-208ENST00000584796 DCBLD2Q96PD2 775 aa10.51□□□□□ -0.73
VAPA-208ENST00000584796 TSPYL2Q9H2G4 693 aaPredicted RBP10.5□□□□□ -0.73
VAPA-208ENST00000584796 CCDC61Q9Y6R9 512 aa10.5□□□□□ -0.73
VAPA-208ENST00000584796 RASEFQ8IZ41 740 aa10.48□□□□□ -0.73
VAPA-208ENST00000584796 ZBTB47Q9UFB7 747 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms