RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 AEBP2Q6ZN18 517 aaPredicted RBP28.59■■■□□ 2.17
SMCHD1-208ENST00000583344 CHIC1Q5VXU3 224 aa27.36■■□□□ 1.97
SMCHD1-208ENST00000583344 SENP3Q9H4L4 574 aaPredicted RBP24.28■■□□□ 1.48
SMCHD1-208ENST00000583344 PHF23Q9BUL5 403 aaPredicted RBP24.04■■□□□ 1.44
SMCHD1-208ENST00000583344 FOXD1Q16676 465 aa22.65■■□□□ 1.22
SMCHD1-208ENST00000583344 PLPPR3Q6T4P5 718 aa21.95■■□□□ 1.1
SMCHD1-208ENST00000583344 PPP6R1Q9UPN7 881 aa21.39■■□□□ 1.01
SMCHD1-208ENST00000583344 ADRA2BP18089 450 aa21.35■■□□□ 1.01
SMCHD1-208ENST00000583344 PIAS4Q8N2W9 510 aaPredicted RBP21.23■□□□□ 0.99
SMCHD1-208ENST00000583344 MSH5O43196 834 aa21.03■□□□□ 0.96
SMCHD1-208ENST00000583344 POTEDQ86YR6 584 aa20.14■□□□□ 0.81
SMCHD1-208ENST00000583344 MAPK8IP2Q13387 824 aaPredicted RBP19.54■□□□□ 0.72
SMCHD1-208ENST00000583344 SCAF1Q9H7N4 1312 aaKnown RBP19.43■□□□□ 0.7
SMCHD1-208ENST00000583344 PPP4R3CPQ6ZMV5 832 aa19.31■□□□□ 0.68
SMCHD1-208ENST00000583344 DMRT2Q9Y5R5 561 aa19.31■□□□□ 0.68
SMCHD1-208ENST00000583344 CNKSR2Q8WXI2 1034 aa18.85■□□□□ 0.61
SMCHD1-208ENST00000583344 HOXD11P31277 338 aaPredicted RBP18.69■□□□□ 0.58
SMCHD1-208ENST00000583344 RNF216Q9NWF9 866 aaPredicted RBP18.61■□□□□ 0.57
SMCHD1-208ENST00000583344 NCBP3Q53F19 620 aaKnown RBP18.59■□□□□ 0.57
SMCHD1-208ENST00000583344 DCAF8L1A6NGE4 600 aa18.55■□□□□ 0.56
SMCHD1-208ENST00000583344 NPM3O75607 178 aaKnown RBP18.39■□□□□ 0.53
SMCHD1-208ENST00000583344 KCNA4P22459 653 aa18.29■□□□□ 0.52
SMCHD1-208ENST00000583344 RNF39Q9H2S5 420 aa18■□□□□ 0.47
SMCHD1-208ENST00000583344 CACNB1Q02641 598 aaPredicted RBP17.93■□□□□ 0.46
SMCHD1-208ENST00000583344 DNAJC5BQ9UF47 199 aa17.91■□□□□ 0.46
SMCHD1-208ENST00000583344 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.83■□□□□ 0.44
SMCHD1-208ENST00000583344 C1QBPQ07021 282 aaKnown RBP17.72■□□□□ 0.43
SMCHD1-208ENST00000583344 U3KPZ7 1027 aaPredicted RBP17.51■□□□□ 0.39
SMCHD1-208ENST00000583344 SLC4A2P04920 1241 aa17.5■□□□□ 0.39
SMCHD1-208ENST00000583344 SLC4A1APQ9BWU0 796 aaKnown RBP17.29■□□□□ 0.36
SMCHD1-208ENST00000583344 SPINK5Q9NQ38 1064 aaPredicted RBP17.2■□□□□ 0.34
SMCHD1-208ENST00000583344 CAPN15O75808 1086 aa17.13■□□□□ 0.33
SMCHD1-208ENST00000583344 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.01■□□□□ 0.31
SMCHD1-208ENST00000583344 HNRNPUL2Q1KMD3 747 aaKnown RBP17.01■□□□□ 0.31
SMCHD1-208ENST00000583344 MYCNP04198 464 aaPredicted RBP16.97■□□□□ 0.31
SMCHD1-208ENST00000583344 DSG3P32926 999 aa16.95■□□□□ 0.3
SMCHD1-208ENST00000583344 APLP2Q06481 763 aa16.95■□□□□ 0.3
SMCHD1-208ENST00000583344 SAMD1Q6SPF0 538 aaPredicted RBP16.95■□□□□ 0.3
SMCHD1-208ENST00000583344 FOXD4L1Q9NU39 408 aa16.95■□□□□ 0.3
SMCHD1-208ENST00000583344 TRHP20396 242 aaPredicted RBP16.93■□□□□ 0.3
SMCHD1-208ENST00000583344 ZBTB22O15209 634 aa16.85■□□□□ 0.29
SMCHD1-208ENST00000583344 ZNF219Q9P2Y4 722 aaPredicted RBP16.85■□□□□ 0.29
SMCHD1-208ENST00000583344 ABCB7O75027 752 aa16.8■□□□□ 0.28
SMCHD1-208ENST00000583344 ATF5Q9Y2D1 282 aaPredicted RBP16.62■□□□□ 0.25
SMCHD1-208ENST00000583344 POLA2Q14181 598 aa16.51■□□□□ 0.23
SMCHD1-208ENST00000583344 ATXN8OSP0DMR3 200 aa16.34■□□□□ 0.21
SMCHD1-208ENST00000583344 CSRNP3Q8WYN3 585 aa16.27■□□□□ 0.2
SMCHD1-208ENST00000583344 EHMT2Q96KQ7 1210 aa16.25■□□□□ 0.19
SMCHD1-208ENST00000583344 ZBTB12Q9Y330 459 aaPredicted RBP16.14■□□□□ 0.17
SMCHD1-208ENST00000583344 RBM42Q9BTD8 480 aaKnown RBP16.12■□□□□ 0.17
SMCHD1-208ENST00000583344 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
SMCHD1-208ENST00000583344 FBLN2P98095 1184 aa15.88■□□□□ 0.13
SMCHD1-208ENST00000583344 MKRN4PQ13434 485 aaPredicted RBP15.86■□□□□ 0.13
SMCHD1-208ENST00000583344 POTEHQ6S545 545 aa15.83■□□□□ 0.12
SMCHD1-208ENST00000583344 AKT1S1Q96B36 256 aa15.82■□□□□ 0.12
SMCHD1-208ENST00000583344 CHRDL2Q6WN34 429 aa15.71■□□□□ 0.11
SMCHD1-208ENST00000583344 REM2Q8IYK8 340 aaPredicted RBP15.7■□□□□ 0.1
SMCHD1-208ENST00000583344 SPDYE2BA6NHP3 402 aa15.68■□□□□ 0.1
SMCHD1-208ENST00000583344 SPDYE6P0CI01 402 aa15.68■□□□□ 0.1
SMCHD1-208ENST00000583344 SPDYE2Q495Y8 402 aa15.68■□□□□ 0.1
SMCHD1-208ENST00000583344 PITPNM1O00562 1244 aa15.56■□□□□ 0.08
SMCHD1-208ENST00000583344 ZNF692Q9BU19 519 aaPredicted RBP15.56■□□□□ 0.08
SMCHD1-208ENST00000583344 SSUH2Q9Y2M2 353 aa15.53■□□□□ 0.08
SMCHD1-208ENST00000583344 PIP4P2Q8N4L2 257 aa15.41■□□□□ 0.06
SMCHD1-208ENST00000583344 PABPN1Q86U42 306 aaKnown RBP eCLIP15.36■□□□□ 0.05
SMCHD1-208ENST00000583344 CLEC11AQ9Y240 323 aa15.36■□□□□ 0.05
SMCHD1-208ENST00000583344 SPDYE1Q8NFV5 336 aaPredicted RBP15.35■□□□□ 0.05
SMCHD1-208ENST00000583344 FXR2P51116 673 aaKnown RBP eCLIP15.33■□□□□ 0.04
SMCHD1-208ENST00000583344 SPDYE4A6NLX3 237 aa15.22■□□□□ 0.03
SMCHD1-208ENST00000583344 PRKAR2AP13861 404 aaKnown RBP15.15■□□□□ 0.02
SMCHD1-208ENST00000583344 PRR29P0C7W0 189 aa15.11■□□□□ 0.01
SMCHD1-208ENST00000583344 CHADLQ6NUI6 762 aa15.07■□□□□ 0
SMCHD1-208ENST00000583344 HAX1O00165 279 aa15.05■□□□□ -0
SMCHD1-208ENST00000583344 SP7Q8TDD2 431 aaPredicted RBP14.95□□□□□ -0.02
SMCHD1-208ENST00000583344 EVX2Q03828 476 aa14.93□□□□□ -0.02
SMCHD1-208ENST00000583344 STAG3Q9UJ98 1225 aa14.92□□□□□ -0.02
SMCHD1-208ENST00000583344 PROM2Q8N271 834 aa14.86□□□□□ -0.03
SMCHD1-208ENST00000583344 C19orf67A6NJJ6 358 aa14.84□□□□□ -0.03
SMCHD1-208ENST00000583344 CREBZFQ9NS37 354 aa14.82□□□□□ -0.04
SMCHD1-208ENST00000583344 FARP1Q9Y4F1 1045 aaPredicted RBP14.82□□□□□ -0.04
SMCHD1-208ENST00000583344 FKBP8Q14318 412 aa14.75□□□□□ -0.05
SMCHD1-208ENST00000583344 CD44P16070 742 aaKnown RBP14.69□□□□□ -0.06
SMCHD1-208ENST00000583344 MNX1P50219 401 aaPredicted RBP14.6□□□□□ -0.07
SMCHD1-208ENST00000583344 GABBR2O75899 941 aa14.57□□□□□ -0.08
SMCHD1-208ENST00000583344 ZRANB1Q9UGI0 708 aa14.52□□□□□ -0.09
SMCHD1-208ENST00000583344 NPM1P06748 294 aaKnown RBP eCLIP14.5□□□□□ -0.09
SMCHD1-208ENST00000583344 MIER1Q8N108 512 aa14.48□□□□□ -0.09
SMCHD1-208ENST00000583344 ZNF579Q8NAF0 562 aaKnown RBP14.44□□□□□ -0.1
SMCHD1-208ENST00000583344 PAK3O75914 559 aaPredicted RBP14.41□□□□□ -0.1
SMCHD1-208ENST00000583344 PLCD3Q8N3E9 789 aa14.4□□□□□ -0.1
SMCHD1-208ENST00000583344 PLEKHG5O94827 1062 aa14.39□□□□□ -0.11
SMCHD1-208ENST00000583344 PHF12Q96QT6 1004 aa14.37□□□□□ -0.11
SMCHD1-208ENST00000583344 TSPYL2Q9H2G4 693 aaPredicted RBP14.32□□□□□ -0.12
SMCHD1-208ENST00000583344 CLCN6P51797 869 aa14.31□□□□□ -0.12
SMCHD1-208ENST00000583344 GALR2O43603 387 aaPredicted RBP14.29□□□□□ -0.12
SMCHD1-208ENST00000583344 POTEIP0CG38 1075 aa14.29□□□□□ -0.12
SMCHD1-208ENST00000583344 FBXO3Q9UK99 471 aa14.29□□□□□ -0.12
SMCHD1-208ENST00000583344 RASEFQ8IZ41 740 aa14.27□□□□□ -0.13
SMCHD1-208ENST00000583344 CCDC61Q9Y6R9 512 aa14.22□□□□□ -0.13
SMCHD1-208ENST00000583344 DCBLD2Q96PD2 775 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms