RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 NISCHQ9Y2I1 1504 aa27.77■■■□□ 2.04
VPS35-210ENST00000568784 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
VPS35-210ENST00000568784 SUPT5HO00267 1087 aaKnown RBP25.03■■□□□ 1.6
VPS35-210ENST00000568784 DCAF8L2P0C7V8 631 aa24.65■■□□□ 1.54
VPS35-210ENST00000568784 PCGF6Q9BYE7 350 aa24.06■■□□□ 1.44
VPS35-210ENST00000568784 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
VPS35-210ENST00000568784 HRCP23327 699 aa23.82■■□□□ 1.4
VPS35-210ENST00000568784 PPARGC1BQ86YN6 1023 aaKnown RBP23.71■■□□□ 1.39
VPS35-210ENST00000568784 MYO15BQ96JP2 1530 aa23.6■■□□□ 1.37
VPS35-210ENST00000568784 LOC105371045A0A1W2PR82 267 aa23.6■■□□□ 1.37
VPS35-210ENST00000568784 EHMT2Q96KQ7 1210 aa23.52■■□□□ 1.36
VPS35-210ENST00000568784 ZCCHC6Q5VYS8 1495 aaKnown RBP23.42■■□□□ 1.34
VPS35-210ENST00000568784 FAM9AQ8IZU1 332 aaPredicted RBP23.32■■□□□ 1.32
VPS35-210ENST00000568784 TRIM26Q12899 539 aaPredicted RBP23.07■■□□□ 1.28
VPS35-210ENST00000568784 TRIM41Q8WV44 630 aa23■■□□□ 1.27
VPS35-210ENST00000568784 CCDC180Q9P1Z9 1646 aa22.88■■□□□ 1.25
VPS35-210ENST00000568784 DCAF1Q9Y4B6 1507 aa22.8■■□□□ 1.24
VPS35-210ENST00000568784 TTBK1Q5TCY1 1321 aaPredicted RBP22.79■■□□□ 1.24
VPS35-210ENST00000568784 ZEB1P37275 1124 aaPredicted RBP22.67■■□□□ 1.22
VPS35-210ENST00000568784 CCER1Q8TC90 406 aaPredicted RBP22.5■■□□□ 1.19
VPS35-210ENST00000568784 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.48■■□□□ 1.19
VPS35-210ENST00000568784 SCRIBQ14160 1630 aa22.38■■□□□ 1.17
VPS35-210ENST00000568784 RSF1Q96T23 1441 aaPredicted RBP22.33■■□□□ 1.17
VPS35-210ENST00000568784 SCAF1Q9H7N4 1312 aaKnown RBP22.3■■□□□ 1.16
VPS35-210ENST00000568784 PELP1Q8IZL8 1130 aaKnown RBP22.16■■□□□ 1.14
VPS35-210ENST00000568784 RB1CC1Q8TDY2 1594 aa22.12■■□□□ 1.13
VPS35-210ENST00000568784 ABCC9O60706 1549 aa22.11■■□□□ 1.13
VPS35-210ENST00000568784 YTHDC1Q96MU7 727 aaKnown RBP22.1■■□□□ 1.13
VPS35-210ENST00000568784 UBTFP17480 764 aaKnown RBP22.09■■□□□ 1.13
VPS35-210ENST00000568784 RANGAP1P46060 587 aaPredicted RBP22.06■■□□□ 1.12
VPS35-210ENST00000568784 DIEXFQ68CQ4 756 aaKnown RBP22.06■■□□□ 1.12
VPS35-210ENST00000568784 CENPBP07199 599 aaPredicted RBP22.03■■□□□ 1.12
VPS35-210ENST00000568784 NEUROD1Q13562 356 aa22■■□□□ 1.11
VPS35-210ENST00000568784 CECR2Q9BXF3 1484 aa21.98■■□□□ 1.11
VPS35-210ENST00000568784 GTF3C3Q9Y5Q9 886 aa21.97■■□□□ 1.11
VPS35-210ENST00000568784 ACIN1Q9UKV3 1341 aaKnown RBP21.96■■□□□ 1.11
VPS35-210ENST00000568784 HNRNPUL2Q1KMD3 747 aaKnown RBP21.9■■□□□ 1.1
VPS35-210ENST00000568784 MROH2BQ7Z745 1585 aa21.79■■□□□ 1.08
VPS35-210ENST00000568784 APLP2Q06481 763 aa21.75■■□□□ 1.07
VPS35-210ENST00000568784 WIZO95785 1651 aa21.64■■□□□ 1.05
VPS35-210ENST00000568784 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.05
VPS35-210ENST00000568784 CSRNP3Q8WYN3 585 aa21.63■■□□□ 1.05
VPS35-210ENST00000568784 PABPN1Q86U42 306 aaKnown RBP eCLIP21.61■■□□□ 1.05
VPS35-210ENST00000568784 CEP162Q5TB80 1403 aa21.57■■□□□ 1.04
VPS35-210ENST00000568784 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
VPS35-210ENST00000568784 SOGA1O94964 1423 aa21.53■■□□□ 1.04
VPS35-210ENST00000568784 CCDC88BA6NC98 1476 aa21.53■■□□□ 1.04
VPS35-210ENST00000568784 MIER1Q8N108 512 aa21.49■■□□□ 1.03
VPS35-210ENST00000568784 NACADO15069 1562 aa21.4■■□□□ 1.02
VPS35-210ENST00000568784 ITGAEP38570 1179 aa21.39■■□□□ 1.02
VPS35-210ENST00000568784 RUSC2Q8N2Y8 1516 aa21.36■■□□□ 1.01
VPS35-210ENST00000568784 TNIKQ9UKE5 1360 aa21.34■■□□□ 1.01
VPS35-210ENST00000568784 BAZ1AQ9NRL2 1556 aaPredicted RBP21.3■■□□□ 1
VPS35-210ENST00000568784 WRNQ14191 1432 aaPredicted RBP eCLIP21.19■□□□□ 0.98
VPS35-210ENST00000568784 GOLGA3Q08378 1498 aa21.19■□□□□ 0.98
VPS35-210ENST00000568784 CLIP1P30622 1438 aa21.19■□□□□ 0.98
VPS35-210ENST00000568784 ATP1B4Q9UN42 357 aaPredicted RBP21.13■□□□□ 0.97
VPS35-210ENST00000568784 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
VPS35-210ENST00000568784 EEA1Q15075 1411 aa21.09■□□□□ 0.97
VPS35-210ENST00000568784 MYT1Q01538 1121 aa21.09■□□□□ 0.97
VPS35-210ENST00000568784 BCANQ96GW7 911 aa21.05■□□□□ 0.96
VPS35-210ENST00000568784 SMARCA2P51531 1590 aa21.04■□□□□ 0.96
VPS35-210ENST00000568784 SMARCA4P51532 1647 aa20.99■□□□□ 0.95
VPS35-210ENST00000568784 CEP164Q9UPV0 1460 aa20.98■□□□□ 0.95
VPS35-210ENST00000568784 KANK4Q5T7N3 995 aaPredicted RBP20.92■□□□□ 0.94
VPS35-210ENST00000568784 VPS8Q8N3P4 1428 aa20.91■□□□□ 0.94
VPS35-210ENST00000568784 EIF4G1Q04637 1599 aaKnown RBP20.9■□□□□ 0.94
VPS35-210ENST00000568784 RAPGEF2Q9Y4G8 1499 aa20.9■□□□□ 0.94
VPS35-210ENST00000568784 FAM50AQ14320 339 aaKnown RBP20.87■□□□□ 0.93
VPS35-210ENST00000568784 HIRIP3Q9BW71 556 aaPredicted RBP20.84■□□□□ 0.93
VPS35-210ENST00000568784 SUPT16HQ9Y5B9 1047 aaKnown RBP20.83■□□□□ 0.93
VPS35-210ENST00000568784 P3H3Q8IVL6 736 aa20.82■□□□□ 0.92
VPS35-210ENST00000568784 DDX10Q13206 875 aaKnown RBP20.8■□□□□ 0.92
VPS35-210ENST00000568784 KCNH8Q96L42 1107 aa20.79■□□□□ 0.92
VPS35-210ENST00000568784 DHX57Q6P158 1386 aaKnown RBP20.74■□□□□ 0.91
VPS35-210ENST00000568784 BAZ1BQ9UIG0 1483 aaKnown RBP20.73■□□□□ 0.91
VPS35-210ENST00000568784 SYNJ1O43426 1573 aa20.73■□□□□ 0.91
VPS35-210ENST00000568784 NEFLP07196 543 aa20.73■□□□□ 0.91
VPS35-210ENST00000568784 FKBP8Q14318 412 aa20.71■□□□□ 0.91
VPS35-210ENST00000568784 SIN3AQ96ST3 1273 aa20.68■□□□□ 0.9
VPS35-210ENST00000568784 TRIM52Q96A61 297 aa20.67■□□□□ 0.9
VPS35-210ENST00000568784 KIF21BO75037 1637 aa20.64■□□□□ 0.89
VPS35-210ENST00000568784 CLSPNQ9HAW4 1339 aa20.6■□□□□ 0.89
VPS35-210ENST00000568784 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.89
VPS35-210ENST00000568784 ATAD2BQ9ULI0 1458 aa20.57■□□□□ 0.88
VPS35-210ENST00000568784 TSHZ2Q9NRE2 1034 aa20.57■□□□□ 0.88
VPS35-210ENST00000568784 ANP32CO43423 234 aa20.52■□□□□ 0.88
VPS35-210ENST00000568784 CNGB1Q14028 1251 aaPredicted RBP20.52■□□□□ 0.88
VPS35-210ENST00000568784 RAB3GAP2Q9H2M9 1393 aa20.51■□□□□ 0.87
VPS35-210ENST00000568784 KIF27Q86VH2 1401 aa20.49■□□□□ 0.87
VPS35-210ENST00000568784 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
VPS35-210ENST00000568784 IRX6P78412 446 aaPredicted RBP20.45■□□□□ 0.86
VPS35-210ENST00000568784 UNC13AQ9UPW8 1703 aa20.45■□□□□ 0.86
VPS35-210ENST00000568784 ANP32EQ9BTT0 268 aa20.39■□□□□ 0.85
VPS35-210ENST00000568784 ERICH6Q7L0X2 663 aa20.38■□□□□ 0.85
VPS35-210ENST00000568784 BICRAQ9NZM4 1560 aa20.37■□□□□ 0.85
VPS35-210ENST00000568784 HNRNPUQ00839 825 aaKnown RBP eCLIP20.34■□□□□ 0.85
VPS35-210ENST00000568784 ARID3CA6NKF2 412 aa20.34■□□□□ 0.85
VPS35-210ENST00000568784 TONSLQ96HA7 1378 aa20.33■□□□□ 0.85
VPS35-210ENST00000568784 CUX2O14529 1486 aa20.33■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 243.2 ms