RNA–Protein interactions for RNA: ENST00000563623.5

ABCA3-203, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best)

Gene ABCA3, Length 3,649 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-203ENST00000563623 NISCHQ9Y2I1 1504 aa22.9■■□□□ 1.26
ABCA3-203ENST00000563623 SHROOM4Q9ULL8 1493 aa20.51■□□□□ 0.87
ABCA3-203ENST00000563623 SUPT5HO00267 1087 aaKnown RBP20.34■□□□□ 0.85
ABCA3-203ENST00000563623 DCAF8L2P0C7V8 631 aa19.96■□□□□ 0.79
ABCA3-203ENST00000563623 PCGF6Q9BYE7 350 aa19.57■□□□□ 0.72
ABCA3-203ENST00000563623 CHIC1Q5VXU3 224 aa19.54■□□□□ 0.72
ABCA3-203ENST00000563623 HRCP23327 699 aa19.49■□□□□ 0.71
ABCA3-203ENST00000563623 MYO15BQ96JP2 1530 aa19.37■□□□□ 0.69
ABCA3-203ENST00000563623 ZCCHC6Q5VYS8 1495 aaKnown RBP19.33■□□□□ 0.69
ABCA3-203ENST00000563623 PPARGC1BQ86YN6 1023 aaKnown RBP19.3■□□□□ 0.68
ABCA3-203ENST00000563623 LOC105371045A0A1W2PR82 267 aa19.22■□□□□ 0.67
ABCA3-203ENST00000563623 CCDC180Q9P1Z9 1646 aa19■□□□□ 0.63
ABCA3-203ENST00000563623 EHMT2Q96KQ7 1210 aa18.99■□□□□ 0.63
ABCA3-203ENST00000563623 FAM9AQ8IZU1 332 aaPredicted RBP18.91■□□□□ 0.62
ABCA3-203ENST00000563623 PELP1Q8IZL8 1130 aaKnown RBP18.9■□□□□ 0.62
ABCA3-203ENST00000563623 TRIM26Q12899 539 aaPredicted RBP18.86■□□□□ 0.61
ABCA3-203ENST00000563623 DCAF1Q9Y4B6 1507 aa18.77■□□□□ 0.6
ABCA3-203ENST00000563623 TRIM41Q8WV44 630 aa18.75■□□□□ 0.59
ABCA3-203ENST00000563623 ZEB1P37275 1124 aaPredicted RBP18.56■□□□□ 0.56
ABCA3-203ENST00000563623 TTBK1Q5TCY1 1321 aaPredicted RBP18.41■□□□□ 0.54
ABCA3-203ENST00000563623 MYT1Q01538 1121 aa18.38■□□□□ 0.53
ABCA3-203ENST00000563623 SCRIBQ14160 1630 aa18.38■□□□□ 0.53
ABCA3-203ENST00000563623 RSF1Q96T23 1441 aaPredicted RBP18.37■□□□□ 0.53
ABCA3-203ENST00000563623 CCER1Q8TC90 406 aaPredicted RBP18.3■□□□□ 0.52
ABCA3-203ENST00000563623 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.29■□□□□ 0.52
ABCA3-203ENST00000563623 ABCC9O60706 1549 aa18.27■□□□□ 0.51
ABCA3-203ENST00000563623 SCAF1Q9H7N4 1312 aaKnown RBP18.22■□□□□ 0.51
ABCA3-203ENST00000563623 RB1CC1Q8TDY2 1594 aa18.2■□□□□ 0.5
ABCA3-203ENST00000563623 CECR2Q9BXF3 1484 aa18.05■□□□□ 0.48
ABCA3-203ENST00000563623 DIEXFQ68CQ4 756 aaKnown RBP17.98■□□□□ 0.47
ABCA3-203ENST00000563623 UBTFP17480 764 aaKnown RBP17.96■□□□□ 0.47
ABCA3-203ENST00000563623 CENPBP07199 599 aaPredicted RBP17.95■□□□□ 0.46
ABCA3-203ENST00000563623 NEUROD1Q13562 356 aa17.95■□□□□ 0.46
ABCA3-203ENST00000563623 ACIN1Q9UKV3 1341 aaKnown RBP17.94■□□□□ 0.46
ABCA3-203ENST00000563623 MROH2BQ7Z745 1585 aa17.93■□□□□ 0.46
ABCA3-203ENST00000563623 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
ABCA3-203ENST00000563623 GTF3C3Q9Y5Q9 886 aa17.9■□□□□ 0.46
ABCA3-203ENST00000563623 RANGAP1P46060 587 aaPredicted RBP17.83■□□□□ 0.45
ABCA3-203ENST00000563623 WIZO95785 1651 aa17.83■□□□□ 0.44
ABCA3-203ENST00000563623 HNRNPUL2Q1KMD3 747 aaKnown RBP17.79■□□□□ 0.44
ABCA3-203ENST00000563623 NACADO15069 1562 aa17.7■□□□□ 0.42
ABCA3-203ENST00000563623 CSRNP3Q8WYN3 585 aa17.7■□□□□ 0.42
ABCA3-203ENST00000563623 ABCC8Q09428 1581 aa17.69■□□□□ 0.42
ABCA3-203ENST00000563623 CEP162Q5TB80 1403 aa17.69■□□□□ 0.42
ABCA3-203ENST00000563623 ZNF316A6NFI3 1004 aaPredicted RBP17.68■□□□□ 0.42
ABCA3-203ENST00000563623 APLP2Q06481 763 aa17.67■□□□□ 0.42
ABCA3-203ENST00000563623 CCDC88BA6NC98 1476 aa17.66■□□□□ 0.42
ABCA3-203ENST00000563623 SOGA1O94964 1423 aa17.65■□□□□ 0.42
ABCA3-203ENST00000563623 PABPN1Q86U42 306 aaKnown RBP eCLIP17.59■□□□□ 0.41
ABCA3-203ENST00000563623 BAZ1AQ9NRL2 1556 aaPredicted RBP17.56■□□□□ 0.4
ABCA3-203ENST00000563623 TNIKQ9UKE5 1360 aa17.54■□□□□ 0.4
ABCA3-203ENST00000563623 MIER1Q8N108 512 aa17.53■□□□□ 0.4
ABCA3-203ENST00000563623 RUSC2Q8N2Y8 1516 aa17.52■□□□□ 0.39
ABCA3-203ENST00000563623 WRNQ14191 1432 aaPredicted RBP eCLIP17.48■□□□□ 0.39
ABCA3-203ENST00000563623 TOP2AP11388 1531 aaKnown RBP17.42■□□□□ 0.38
ABCA3-203ENST00000563623 GOLGA3Q08378 1498 aa17.4■□□□□ 0.38
ABCA3-203ENST00000563623 EEA1Q15075 1411 aa17.37■□□□□ 0.37
ABCA3-203ENST00000563623 SMARCA2P51531 1590 aa17.36■□□□□ 0.37
ABCA3-203ENST00000563623 CLIP1P30622 1438 aa17.35■□□□□ 0.37
ABCA3-203ENST00000563623 EIF4G1Q04637 1599 aaKnown RBP17.34■□□□□ 0.37
ABCA3-203ENST00000563623 ITGAEP38570 1179 aa17.34■□□□□ 0.37
ABCA3-203ENST00000563623 SMARCA4P51532 1647 aa17.34■□□□□ 0.37
ABCA3-203ENST00000563623 CEP164Q9UPV0 1460 aa17.24■□□□□ 0.35
ABCA3-203ENST00000563623 BCL11AQ9H165 835 aa17.21■□□□□ 0.35
ABCA3-203ENST00000563623 VPS8Q8N3P4 1428 aa17.18■□□□□ 0.34
ABCA3-203ENST00000563623 RAPGEF2Q9Y4G8 1499 aa17.14■□□□□ 0.33
ABCA3-203ENST00000563623 ATP1B4Q9UN42 357 aaPredicted RBP17.1■□□□□ 0.33
ABCA3-203ENST00000563623 KANK4Q5T7N3 995 aaPredicted RBP17.1■□□□□ 0.33
ABCA3-203ENST00000563623 SYNJ1O43426 1573 aa17.08■□□□□ 0.32
ABCA3-203ENST00000563623 BCANQ96GW7 911 aa17.06■□□□□ 0.32
ABCA3-203ENST00000563623 BAZ1BQ9UIG0 1483 aaKnown RBP17.03■□□□□ 0.32
ABCA3-203ENST00000563623 SUPT16HQ9Y5B9 1047 aaKnown RBP17.02■□□□□ 0.32
ABCA3-203ENST00000563623 DHX57Q6P158 1386 aaKnown RBP17.01■□□□□ 0.31
ABCA3-203ENST00000563623 KIF21BO75037 1637 aa16.99■□□□□ 0.31
ABCA3-203ENST00000563623 PRKCSHP14314 528 aaPredicted RBP16.98■□□□□ 0.31
ABCA3-203ENST00000563623 UNC13AQ9UPW8 1703 aa16.98■□□□□ 0.31
ABCA3-203ENST00000563623 FAM50AQ14320 339 aaKnown RBP16.97■□□□□ 0.31
ABCA3-203ENST00000563623 KCNH8Q96L42 1107 aa16.94■□□□□ 0.3
ABCA3-203ENST00000563623 ATAD2BQ9ULI0 1458 aa16.93■□□□□ 0.3
ABCA3-203ENST00000563623 CLSPNQ9HAW4 1339 aa16.93■□□□□ 0.3
ABCA3-203ENST00000563623 DDX10Q13206 875 aaKnown RBP16.93■□□□□ 0.3
ABCA3-203ENST00000563623 P3H3Q8IVL6 736 aa16.91■□□□□ 0.3
ABCA3-203ENST00000563623 HIRIP3Q9BW71 556 aaPredicted RBP16.91■□□□□ 0.3
ABCA3-203ENST00000563623 CCNB3Q8WWL7 1395 aa16.86■□□□□ 0.29
ABCA3-203ENST00000563623 FKBP8Q14318 412 aa16.86■□□□□ 0.29
ABCA3-203ENST00000563623 NEFLP07196 543 aa16.85■□□□□ 0.29
ABCA3-203ENST00000563623 SIN3AQ96ST3 1273 aa16.85■□□□□ 0.29
ABCA3-203ENST00000563623 BICRAQ9NZM4 1560 aa16.84■□□□□ 0.29
ABCA3-203ENST00000563623 ARAP1Q96P48 1450 aa16.82■□□□□ 0.28
ABCA3-203ENST00000563623 TSHZ2Q9NRE2 1034 aa16.81■□□□□ 0.28
ABCA3-203ENST00000563623 KIF27Q86VH2 1401 aa16.81■□□□□ 0.28
ABCA3-203ENST00000563623 TRIM52Q96A61 297 aa16.79■□□□□ 0.28
ABCA3-203ENST00000563623 RAB3GAP2Q9H2M9 1393 aa16.78■□□□□ 0.28
ABCA3-203ENST00000563623 PRXQ9BXM0 1461 aa16.74■□□□□ 0.27
ABCA3-203ENST00000563623 TOP2BQ02880 1626 aa16.73■□□□□ 0.27
ABCA3-203ENST00000563623 ERICH6Q7L0X2 663 aa16.73■□□□□ 0.27
ABCA3-203ENST00000563623 PEG3Q9GZU2 1588 aa16.73■□□□□ 0.27
ABCA3-203ENST00000563623 ANP32CO43423 234 aa16.72■□□□□ 0.27
ABCA3-203ENST00000563623 RRBP1Q9P2E9 1410 aaKnown RBP16.7■□□□□ 0.26
ABCA3-203ENST00000563623 ERICH3Q5RHP9 1530 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms