RNA–Protein interactions for RNA: ENST00000563219.1

SHCBP1-202, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 3

Gene SHCBP1, Length 485 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-202ENST00000563219 AEBP2Q6ZN18 517 aaPredicted RBP19.72■□□□□ 0.75
SHCBP1-202ENST00000563219 CHIC1Q5VXU3 224 aa18.91■□□□□ 0.62
SHCBP1-202ENST00000563219 SENP3Q9H4L4 574 aaPredicted RBP16.8■□□□□ 0.28
SHCBP1-202ENST00000563219 PHF23Q9BUL5 403 aaPredicted RBP16.62■□□□□ 0.25
SHCBP1-202ENST00000563219 FOXD1Q16676 465 aa15.64■□□□□ 0.09
SHCBP1-202ENST00000563219 PLPPR3Q6T4P5 718 aa15.19■□□□□ 0.02
SHCBP1-202ENST00000563219 PPP6R1Q9UPN7 881 aa14.77□□□□□ -0.05
SHCBP1-202ENST00000563219 ADRA2BP18089 450 aa14.72□□□□□ -0.05
SHCBP1-202ENST00000563219 PIAS4Q8N2W9 510 aaPredicted RBP14.64□□□□□ -0.07
SHCBP1-202ENST00000563219 MSH5O43196 834 aa14.57□□□□□ -0.08
SHCBP1-202ENST00000563219 POTEDQ86YR6 584 aa13.91□□□□□ -0.18
SHCBP1-202ENST00000563219 SCAF1Q9H7N4 1312 aaKnown RBP13.49□□□□□ -0.25
SHCBP1-202ENST00000563219 MAPK8IP2Q13387 824 aaPredicted RBP13.47□□□□□ -0.25
SHCBP1-202ENST00000563219 DMRT2Q9Y5R5 561 aa13.36□□□□□ -0.27
SHCBP1-202ENST00000563219 PPP4R3CPQ6ZMV5 832 aa13.34□□□□□ -0.27
SHCBP1-202ENST00000563219 CNKSR2Q8WXI2 1034 aa13.06□□□□□ -0.32
SHCBP1-202ENST00000563219 HOXD11P31277 338 aaPredicted RBP12.94□□□□□ -0.34
SHCBP1-202ENST00000563219 NCBP3Q53F19 620 aaKnown RBP12.89□□□□□ -0.35
SHCBP1-202ENST00000563219 RNF216Q9NWF9 866 aaPredicted RBP12.89□□□□□ -0.35
SHCBP1-202ENST00000563219 DCAF8L1A6NGE4 600 aa12.77□□□□□ -0.37
SHCBP1-202ENST00000563219 NPM3O75607 178 aaKnown RBP12.69□□□□□ -0.38
SHCBP1-202ENST00000563219 KCNA4P22459 653 aa12.6□□□□□ -0.39
SHCBP1-202ENST00000563219 DNAJC5BQ9UF47 199 aa12.49□□□□□ -0.41
SHCBP1-202ENST00000563219 RNF39Q9H2S5 420 aa12.46□□□□□ -0.41
SHCBP1-202ENST00000563219 CACNB1Q02641 598 aaPredicted RBP12.38□□□□□ -0.43
SHCBP1-202ENST00000563219 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHCBP1-202ENST00000563219 C1QBPQ07021 282 aaKnown RBP12.29□□□□□ -0.44
SHCBP1-202ENST00000563219 SLC4A2P04920 1241 aa12.08□□□□□ -0.48
SHCBP1-202ENST00000563219 U3KPZ7 1027 aaPredicted RBP12.07□□□□□ -0.48
SHCBP1-202ENST00000563219 SLC4A1APQ9BWU0 796 aaKnown RBP11.93□□□□□ -0.5
SHCBP1-202ENST00000563219 SPINK5Q9NQ38 1064 aaPredicted RBP11.84□□□□□ -0.51
SHCBP1-202ENST00000563219 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.81□□□□□ -0.52
SHCBP1-202ENST00000563219 CAPN15O75808 1086 aa11.81□□□□□ -0.52
SHCBP1-202ENST00000563219 HNRNPUL2Q1KMD3 747 aaKnown RBP11.81□□□□□ -0.52
SHCBP1-202ENST00000563219 APLP2Q06481 763 aa11.77□□□□□ -0.53
SHCBP1-202ENST00000563219 SAMD1Q6SPF0 538 aaPredicted RBP11.74□□□□□ -0.53
SHCBP1-202ENST00000563219 MYCNP04198 464 aaPredicted RBP11.73□□□□□ -0.53
SHCBP1-202ENST00000563219 DSG3P32926 999 aa11.72□□□□□ -0.53
SHCBP1-202ENST00000563219 FOXD4L1Q9NU39 408 aa11.7□□□□□ -0.54
SHCBP1-202ENST00000563219 TRHP20396 242 aaPredicted RBP11.66□□□□□ -0.54
SHCBP1-202ENST00000563219 ZNF219Q9P2Y4 722 aaPredicted RBP11.66□□□□□ -0.54
SHCBP1-202ENST00000563219 ZBTB22O15209 634 aa11.59□□□□□ -0.55
SHCBP1-202ENST00000563219 ABCB7O75027 752 aa11.54□□□□□ -0.56
SHCBP1-202ENST00000563219 ATF5Q9Y2D1 282 aaPredicted RBP11.45□□□□□ -0.58
SHCBP1-202ENST00000563219 POLA2Q14181 598 aa11.42□□□□□ -0.58
SHCBP1-202ENST00000563219 ATXN8OSP0DMR3 200 aa11.36□□□□□ -0.59
SHCBP1-202ENST00000563219 CSRNP3Q8WYN3 585 aa11.23□□□□□ -0.61
SHCBP1-202ENST00000563219 ZBTB12Q9Y330 459 aaPredicted RBP11.19□□□□□ -0.62
SHCBP1-202ENST00000563219 RBM42Q9BTD8 480 aaKnown RBP11.17□□□□□ -0.62
SHCBP1-202ENST00000563219 EHMT2Q96KQ7 1210 aa11.13□□□□□ -0.63
SHCBP1-202ENST00000563219 OSCARQ8IYS5 282 aa11□□□□□ -0.65
SHCBP1-202ENST00000563219 FBLN2P98095 1184 aa10.99□□□□□ -0.65
SHCBP1-202ENST00000563219 AKT1S1Q96B36 256 aa10.96□□□□□ -0.65
SHCBP1-202ENST00000563219 POTEHQ6S545 545 aa10.94□□□□□ -0.66
SHCBP1-202ENST00000563219 MKRN4PQ13434 485 aaPredicted RBP10.93□□□□□ -0.66
SHCBP1-202ENST00000563219 SPDYE2BA6NHP3 402 aa10.86□□□□□ -0.67
SHCBP1-202ENST00000563219 SPDYE6P0CI01 402 aa10.86□□□□□ -0.67
SHCBP1-202ENST00000563219 SPDYE2Q495Y8 402 aa10.86□□□□□ -0.67
SHCBP1-202ENST00000563219 CHRDL2Q6WN34 429 aa10.86□□□□□ -0.67
SHCBP1-202ENST00000563219 REM2Q8IYK8 340 aaPredicted RBP10.86□□□□□ -0.67
SHCBP1-202ENST00000563219 ZNF692Q9BU19 519 aaPredicted RBP10.76□□□□□ -0.69
SHCBP1-202ENST00000563219 SSUH2Q9Y2M2 353 aa10.73□□□□□ -0.69
SHCBP1-202ENST00000563219 PITPNM1O00562 1244 aa10.72□□□□□ -0.69
SHCBP1-202ENST00000563219 PIP4P2Q8N4L2 257 aa10.64□□□□□ -0.71
SHCBP1-202ENST00000563219 SPDYE1Q8NFV5 336 aaPredicted RBP10.63□□□□□ -0.71
SHCBP1-202ENST00000563219 FXR2P51116 673 aaKnown RBP eCLIP10.61□□□□□ -0.71
SHCBP1-202ENST00000563219 PABPN1Q86U42 306 aaKnown RBP eCLIP10.6□□□□□ -0.71
SHCBP1-202ENST00000563219 CLEC11AQ9Y240 323 aa10.58□□□□□ -0.72
SHCBP1-202ENST00000563219 SPDYE4A6NLX3 237 aa10.51□□□□□ -0.73
SHCBP1-202ENST00000563219 PRR29P0C7W0 189 aa10.45□□□□□ -0.74
SHCBP1-202ENST00000563219 PRKAR2AP13861 404 aaKnown RBP10.45□□□□□ -0.74
SHCBP1-202ENST00000563219 HAX1O00165 279 aa10.4□□□□□ -0.74
SHCBP1-202ENST00000563219 CHADLQ6NUI6 762 aa10.36□□□□□ -0.75
SHCBP1-202ENST00000563219 STAG3Q9UJ98 1225 aa10.36□□□□□ -0.75
SHCBP1-202ENST00000563219 SP7Q8TDD2 431 aaPredicted RBP10.34□□□□□ -0.75
SHCBP1-202ENST00000563219 EVX2Q03828 476 aa10.29□□□□□ -0.76
SHCBP1-202ENST00000563219 PROM2Q8N271 834 aa10.29□□□□□ -0.76
SHCBP1-202ENST00000563219 C19orf67A6NJJ6 358 aa10.26□□□□□ -0.77
SHCBP1-202ENST00000563219 FARP1Q9Y4F1 1045 aaPredicted RBP10.25□□□□□ -0.77
SHCBP1-202ENST00000563219 CREBZFQ9NS37 354 aa10.23□□□□□ -0.77
SHCBP1-202ENST00000563219 FKBP8Q14318 412 aa10.15□□□□□ -0.78
SHCBP1-202ENST00000563219 CD44P16070 742 aaKnown RBP10.12□□□□□ -0.79
SHCBP1-202ENST00000563219 MNX1P50219 401 aaPredicted RBP10.1□□□□□ -0.79
SHCBP1-202ENST00000563219 GABBR2O75899 941 aa10.07□□□□□ -0.8
SHCBP1-202ENST00000563219 NPM1P06748 294 aaKnown RBP eCLIP10.05□□□□□ -0.8
SHCBP1-202ENST00000563219 MIER1Q8N108 512 aa10.02□□□□□ -0.81
SHCBP1-202ENST00000563219 ZRANB1Q9UGI0 708 aa10.02□□□□□ -0.81
SHCBP1-202ENST00000563219 CLCN6P51797 869 aa10.01□□□□□ -0.81
SHCBP1-202ENST00000563219 PLEKHG5O94827 1062 aa9.98□□□□□ -0.81
SHCBP1-202ENST00000563219 ZNF579Q8NAF0 562 aaKnown RBP9.98□□□□□ -0.81
SHCBP1-202ENST00000563219 PAK3O75914 559 aaPredicted RBP9.97□□□□□ -0.81
SHCBP1-202ENST00000563219 PLCD3Q8N3E9 789 aa9.94□□□□□ -0.82
SHCBP1-202ENST00000563219 FBXO3Q9UK99 471 aa9.92□□□□□ -0.82
SHCBP1-202ENST00000563219 PHF12Q96QT6 1004 aa9.87□□□□□ -0.83
SHCBP1-202ENST00000563219 ZBTB47Q9UFB7 747 aaPredicted RBP9.87□□□□□ -0.83
SHCBP1-202ENST00000563219 TSPYL2Q9H2G4 693 aaPredicted RBP9.86□□□□□ -0.83
SHCBP1-202ENST00000563219 POTEIP0CG38 1075 aa9.85□□□□□ -0.83
SHCBP1-202ENST00000563219 GALR2O43603 387 aaPredicted RBP9.84□□□□□ -0.83
SHCBP1-202ENST00000563219 DCBLD2Q96PD2 775 aa9.83□□□□□ -0.84
SHCBP1-202ENST00000563219 RASEFQ8IZ41 740 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 187.8 ms