RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 AEBP2Q6ZN18 517 aaPredicted RBP28.06■■■□□ 2.08
SMG1-206ENST00000562668 CHIC1Q5VXU3 224 aa26.97■■□□□ 1.91
SMG1-206ENST00000562668 SENP3Q9H4L4 574 aaPredicted RBP23.91■■□□□ 1.42
SMG1-206ENST00000562668 PHF23Q9BUL5 403 aaPredicted RBP23.63■■□□□ 1.37
SMG1-206ENST00000562668 FOXD1Q16676 465 aa22.22■■□□□ 1.15
SMG1-206ENST00000562668 PLPPR3Q6T4P5 718 aa21.7■■□□□ 1.06
SMG1-206ENST00000562668 PPP6R1Q9UPN7 881 aa20.98■□□□□ 0.95
SMG1-206ENST00000562668 ADRA2BP18089 450 aa20.95■□□□□ 0.94
SMG1-206ENST00000562668 PIAS4Q8N2W9 510 aaPredicted RBP20.86■□□□□ 0.93
SMG1-206ENST00000562668 MSH5O43196 834 aa20.7■□□□□ 0.9
SMG1-206ENST00000562668 POTEDQ86YR6 584 aa19.64■□□□□ 0.73
SMG1-206ENST00000562668 SCAF1Q9H7N4 1312 aaKnown RBP19.2■□□□□ 0.66
SMG1-206ENST00000562668 MAPK8IP2Q13387 824 aaPredicted RBP19.13■□□□□ 0.65
SMG1-206ENST00000562668 PPP4R3CPQ6ZMV5 832 aa19.04■□□□□ 0.64
SMG1-206ENST00000562668 DMRT2Q9Y5R5 561 aa19.01■□□□□ 0.63
SMG1-206ENST00000562668 CNKSR2Q8WXI2 1034 aa18.62■□□□□ 0.57
SMG1-206ENST00000562668 HOXD11P31277 338 aaPredicted RBP18.43■□□□□ 0.54
SMG1-206ENST00000562668 NCBP3Q53F19 620 aaKnown RBP18.42■□□□□ 0.54
SMG1-206ENST00000562668 RNF216Q9NWF9 866 aaPredicted RBP18.38■□□□□ 0.53
SMG1-206ENST00000562668 DCAF8L1A6NGE4 600 aa18.19■□□□□ 0.5
SMG1-206ENST00000562668 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
SMG1-206ENST00000562668 KCNA4P22459 653 aa18.08■□□□□ 0.48
SMG1-206ENST00000562668 DNAJC5BQ9UF47 199 aa17.75■□□□□ 0.43
SMG1-206ENST00000562668 RNF39Q9H2S5 420 aa17.68■□□□□ 0.42
SMG1-206ENST00000562668 CACNB1Q02641 598 aaPredicted RBP17.55■□□□□ 0.4
SMG1-206ENST00000562668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.55■□□□□ 0.45e-8■□□□□ 10.4
SMG1-206ENST00000562668 C1QBPQ07021 282 aaKnown RBP17.44■□□□□ 0.38
SMG1-206ENST00000562668 SLC4A2P04920 1241 aa17.24■□□□□ 0.35
SMG1-206ENST00000562668 U3KPZ7 1027 aaPredicted RBP17.24■□□□□ 0.35
SMG1-206ENST00000562668 SLC4A1APQ9BWU0 796 aaKnown RBP17.14■□□□□ 0.33
SMG1-206ENST00000562668 SPINK5Q9NQ38 1064 aaPredicted RBP16.87■□□□□ 0.29
SMG1-206ENST00000562668 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.86■□□□□ 0.29
SMG1-206ENST00000562668 HNRNPUL2Q1KMD3 747 aaKnown RBP16.86■□□□□ 0.29
SMG1-206ENST00000562668 CAPN15O75808 1086 aa16.83■□□□□ 0.28
SMG1-206ENST00000562668 MYCNP04198 464 aaPredicted RBP16.81■□□□□ 0.28
SMG1-206ENST00000562668 APLP2Q06481 763 aa16.81■□□□□ 0.28
SMG1-206ENST00000562668 FOXD4L1Q9NU39 408 aa16.8■□□□□ 0.28
SMG1-206ENST00000562668 SAMD1Q6SPF0 538 aaPredicted RBP16.78■□□□□ 0.28
SMG1-206ENST00000562668 DSG3P32926 999 aa16.66■□□□□ 0.26
SMG1-206ENST00000562668 ZNF219Q9P2Y4 722 aaPredicted RBP16.65■□□□□ 0.26
SMG1-206ENST00000562668 ZBTB22O15209 634 aa16.63■□□□□ 0.25
SMG1-206ENST00000562668 TRHP20396 242 aaPredicted RBP16.63■□□□□ 0.25
SMG1-206ENST00000562668 ABCB7O75027 752 aa16.47■□□□□ 0.23
SMG1-206ENST00000562668 ATF5Q9Y2D1 282 aaPredicted RBP16.34■□□□□ 0.21
SMG1-206ENST00000562668 ATXN8OSP0DMR3 200 aa16.24■□□□□ 0.19
SMG1-206ENST00000562668 POLA2Q14181 598 aa16.24■□□□□ 0.19
SMG1-206ENST00000562668 CSRNP3Q8WYN3 585 aa16.13■□□□□ 0.17
SMG1-206ENST00000562668 EHMT2Q96KQ7 1210 aa16.12■□□□□ 0.17
SMG1-206ENST00000562668 ZBTB12Q9Y330 459 aaPredicted RBP16■□□□□ 0.15
SMG1-206ENST00000562668 RBM42Q9BTD8 480 aaKnown RBP15.92■□□□□ 0.14
SMG1-206ENST00000562668 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
SMG1-206ENST00000562668 FBLN2P98095 1184 aa15.73■□□□□ 0.11
SMG1-206ENST00000562668 MKRN4PQ13434 485 aaPredicted RBP15.63■□□□□ 0.09
SMG1-206ENST00000562668 AKT1S1Q96B36 256 aa15.6■□□□□ 0.09
SMG1-206ENST00000562668 SPDYE2BA6NHP3 402 aa15.51■□□□□ 0.07
SMG1-206ENST00000562668 SPDYE6P0CI01 402 aa15.51■□□□□ 0.07
SMG1-206ENST00000562668 SPDYE2Q495Y8 402 aa15.51■□□□□ 0.07
SMG1-206ENST00000562668 POTEHQ6S545 545 aa15.46■□□□□ 0.07
SMG1-206ENST00000562668 REM2Q8IYK8 340 aaPredicted RBP15.44■□□□□ 0.06
SMG1-206ENST00000562668 CHRDL2Q6WN34 429 aa15.42■□□□□ 0.06
SMG1-206ENST00000562668 ZNF692Q9BU19 519 aaPredicted RBP15.35■□□□□ 0.05
SMG1-206ENST00000562668 SSUH2Q9Y2M2 353 aa15.35■□□□□ 0.05
SMG1-206ENST00000562668 PITPNM1O00562 1244 aa15.29■□□□□ 0.04
SMG1-206ENST00000562668 SPDYE1Q8NFV5 336 aaPredicted RBP15.16■□□□□ 0.02
SMG1-206ENST00000562668 PABPN1Q86U42 306 aaKnown RBP eCLIP15.14■□□□□ 0.01
SMG1-206ENST00000562668 PIP4P2Q8N4L2 257 aa15.12■□□□□ 0.01
SMG1-206ENST00000562668 CLEC11AQ9Y240 323 aa15.09■□□□□ 0.01
SMG1-206ENST00000562668 FXR2P51116 673 aaKnown RBP eCLIP15.08■□□□□ 01e-13■■■□□ 14.6
SMG1-206ENST00000562668 SPDYE4A6NLX3 237 aa15.06■□□□□ 0
SMG1-206ENST00000562668 PRR29P0C7W0 189 aa14.89□□□□□ -0.03
SMG1-206ENST00000562668 PRKAR2AP13861 404 aaKnown RBP14.89□□□□□ -0.03
SMG1-206ENST00000562668 STAG3Q9UJ98 1225 aa14.8□□□□□ -0.04
SMG1-206ENST00000562668 CHADLQ6NUI6 762 aa14.77□□□□□ -0.05
SMG1-206ENST00000562668 PROM2Q8N271 834 aa14.77□□□□□ -0.05
SMG1-206ENST00000562668 HAX1O00165 279 aa14.74□□□□□ -0.05
SMG1-206ENST00000562668 SP7Q8TDD2 431 aaPredicted RBP14.65□□□□□ -0.06
SMG1-206ENST00000562668 FKBP8Q14318 412 aa14.63□□□□□ -0.07
SMG1-206ENST00000562668 CREBZFQ9NS37 354 aa14.61□□□□□ -0.07
SMG1-206ENST00000562668 C19orf67A6NJJ6 358 aa14.59□□□□□ -0.07
SMG1-206ENST00000562668 FARP1Q9Y4F1 1045 aaPredicted RBP14.59□□□□□ -0.07
SMG1-206ENST00000562668 EVX2Q03828 476 aa14.56□□□□□ -0.08
SMG1-206ENST00000562668 CD44P16070 742 aaKnown RBP14.45□□□□□ -0.1
SMG1-206ENST00000562668 MNX1P50219 401 aaPredicted RBP14.39□□□□□ -0.11
SMG1-206ENST00000562668 NPM1P06748 294 aaKnown RBP eCLIP14.36□□□□□ -0.11
SMG1-206ENST00000562668 PLEKHG5O94827 1062 aa14.3□□□□□ -0.12
SMG1-206ENST00000562668 MIER1Q8N108 512 aa14.29□□□□□ -0.12
SMG1-206ENST00000562668 ZRANB1Q9UGI0 708 aa14.28□□□□□ -0.12
SMG1-206ENST00000562668 GABBR2O75899 941 aa14.27□□□□□ -0.13
SMG1-206ENST00000562668 ZNF579Q8NAF0 562 aaKnown RBP14.26□□□□□ -0.13
SMG1-206ENST00000562668 PAK3O75914 559 aaPredicted RBP14.25□□□□□ -0.13
SMG1-206ENST00000562668 PLCD3Q8N3E9 789 aa14.25□□□□□ -0.13
SMG1-206ENST00000562668 FBXO3Q9UK99 471 aa14.24□□□□□ -0.13
SMG1-206ENST00000562668 CLCN6P51797 869 aa14.19□□□□□ -0.14
SMG1-206ENST00000562668 ZBTB47Q9UFB7 747 aaPredicted RBP14.15□□□□□ -0.14
SMG1-206ENST00000562668 PHF12Q96QT6 1004 aa14.12□□□□□ -0.15
SMG1-206ENST00000562668 TSPYL2Q9H2G4 693 aaPredicted RBP14.09□□□□□ -0.15
SMG1-206ENST00000562668 VASPP50552 380 aaPredicted RBP14.08□□□□□ -0.16
SMG1-206ENST00000562668 RASEFQ8IZ41 740 aa14.06□□□□□ -0.16
SMG1-206ENST00000562668 GALR2O43603 387 aaPredicted RBP14.03□□□□□ -0.16
SMG1-206ENST00000562668 CCDC61Q9Y6R9 512 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms