RNA–Protein interactions for RNA: ENST00000561947.5

SMG1-205, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 2,664 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-205ENST00000561947 NISCHQ9Y2I1 1504 aa21.42■■□□□ 1.02
SMG1-205ENST00000561947 CCDC180Q9P1Z9 1646 aa18.51■□□□□ 0.55
SMG1-205ENST00000561947 ZCCHC6Q5VYS8 1495 aaKnown RBP18.07■□□□□ 0.48
SMG1-205ENST00000561947 SHROOM4Q9ULL8 1493 aa17.77■□□□□ 0.43
SMG1-205ENST00000561947 DCAF1Q9Y4B6 1507 aa17.69■□□□□ 0.42
SMG1-205ENST00000561947 DCAF8L2P0C7V8 631 aa17.58■□□□□ 0.41
SMG1-205ENST00000561947 MYO15BQ96JP2 1530 aa17.33■□□□□ 0.36
SMG1-205ENST00000561947 SUPT5HO00267 1087 aaKnown RBP17.25■□□□□ 0.35
SMG1-205ENST00000561947 ABCC9O60706 1549 aa17.21■□□□□ 0.35
SMG1-205ENST00000561947 NACADO15069 1562 aa17.14■□□□□ 0.33
SMG1-205ENST00000561947 SCRIBQ14160 1630 aa17.11■□□□□ 0.33
SMG1-205ENST00000561947 RB1CC1Q8TDY2 1594 aa16.92■□□□□ 0.3
SMG1-205ENST00000561947 RSF1Q96T23 1441 aaPredicted RBP16.76■□□□□ 0.27
SMG1-205ENST00000561947 CHIC1Q5VXU3 224 aa16.69■□□□□ 0.26
SMG1-205ENST00000561947 UNC13AQ9UPW8 1703 aa16.66■□□□□ 0.26
SMG1-205ENST00000561947 CECR2Q9BXF3 1484 aa16.64■□□□□ 0.25
SMG1-205ENST00000561947 MROH2BQ7Z745 1585 aa16.58■□□□□ 0.24
SMG1-205ENST00000561947 BAZ1AQ9NRL2 1556 aaPredicted RBP16.51■□□□□ 0.23
SMG1-205ENST00000561947 WIZO95785 1651 aa16.49■□□□□ 0.23
SMG1-205ENST00000561947 BICRAQ9NZM4 1560 aa16.43■□□□□ 0.22
SMG1-205ENST00000561947 SMARCA4P51532 1647 aa16.41■□□□□ 0.22
SMG1-205ENST00000561947 PABPN1Q86U42 306 aaKnown RBP eCLIP16.3■□□□□ 0.2
SMG1-205ENST00000561947 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
SMG1-205ENST00000561947 EIF4G1Q04637 1599 aaKnown RBP16.19■□□□□ 0.18
SMG1-205ENST00000561947 TRIM41Q8WV44 630 aa16.17■□□□□ 0.18
SMG1-205ENST00000561947 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
SMG1-205ENST00000561947 SMARCA2P51531 1590 aa16.16■□□□□ 0.18
SMG1-205ENST00000561947 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
SMG1-205ENST00000561947 LOC105371045A0A1W2PR82 267 aa16.08■□□□□ 0.16
SMG1-205ENST00000561947 ATAD2BQ9ULI0 1458 aa16.03■□□□□ 0.16
SMG1-205ENST00000561947 BAZ1BQ9UIG0 1483 aaKnown RBP15.97■□□□□ 0.15
SMG1-205ENST00000561947 ABCC8Q09428 1581 aa15.94■□□□□ 0.14
SMG1-205ENST00000561947 FAM9AQ8IZU1 332 aaPredicted RBP15.92■□□□□ 0.14
SMG1-205ENST00000561947 HMGXB3Q12766 1538 aa15.84■□□□□ 0.13
SMG1-205ENST00000561947 NCAPD3P42695 1498 aa15.81■□□□□ 0.12
SMG1-205ENST00000561947 WRNQ14191 1432 aaPredicted RBP eCLIP15.76■□□□□ 0.11
SMG1-205ENST00000561947 PCGF6Q9BYE7 350 aa15.72■□□□□ 0.11
SMG1-205ENST00000561947 SYNJ1O43426 1573 aa15.71■□□□□ 0.11
SMG1-205ENST00000561947 EEA1Q15075 1411 aa15.7■□□□□ 0.1
SMG1-205ENST00000561947 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
SMG1-205ENST00000561947 SOGA1O94964 1423 aa15.69■□□□□ 0.1
SMG1-205ENST00000561947 RUSC2Q8N2Y8 1516 aa15.63■□□□□ 0.09
SMG1-205ENST00000561947 TRIM26Q12899 539 aaPredicted RBP15.61■□□□□ 0.09
SMG1-205ENST00000561947 TOP2BQ02880 1626 aa15.6■□□□□ 0.09
SMG1-205ENST00000561947 CSRNP3Q8WYN3 585 aa15.59■□□□□ 0.09
SMG1-205ENST00000561947 CC2D2AQ9P2K1 1620 aa15.58■□□□□ 0.09
SMG1-205ENST00000561947 BIVM-ERCC5R4GMW8 1640 aa15.58■□□□□ 0.09
SMG1-205ENST00000561947 CFTRP13569 1480 aa15.57■□□□□ 0.08
SMG1-205ENST00000561947 PRDM2Q13029 1718 aa15.56■□□□□ 0.08
SMG1-205ENST00000561947 HRCP23327 699 aa15.55■□□□□ 0.08
SMG1-205ENST00000561947 TNIKQ9UKE5 1360 aa15.53■□□□□ 0.08
SMG1-205ENST00000561947 GOLGA3Q08378 1498 aa15.52■□□□□ 0.08
SMG1-205ENST00000561947 KIF21BO75037 1637 aa15.51■□□□□ 0.07
SMG1-205ENST00000561947 CEP162Q5TB80 1403 aa15.5■□□□□ 0.07
SMG1-205ENST00000561947 CEP164Q9UPV0 1460 aa15.48■□□□□ 0.07
SMG1-205ENST00000561947 CUX1P39880 1505 aa15.48■□□□□ 0.07
SMG1-205ENST00000561947 CADPSQ9ULU8 1353 aa15.44■□□□□ 0.06
SMG1-205ENST00000561947 UBTFP17480 764 aaKnown RBP15.43■□□□□ 0.06
SMG1-205ENST00000561947 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
SMG1-205ENST00000561947 ERICH3Q5RHP9 1530 aa15.33■□□□□ 0.04
SMG1-205ENST00000561947 KIF27Q86VH2 1401 aa15.32■□□□□ 0.04
SMG1-205ENST00000561947 PPARGC1BQ86YN6 1023 aaKnown RBP15.31■□□□□ 0.04
SMG1-205ENST00000561947 PRXQ9BXM0 1461 aa15.31■□□□□ 0.04
SMG1-205ENST00000561947 CLIP1P30622 1438 aa15.29■□□□□ 0.04
SMG1-205ENST00000561947 FANCD2Q9BXW9 1451 aa15.29■□□□□ 0.04
SMG1-205ENST00000561947 FGD5Q6ZNL6 1462 aa15.25■□□□□ 0.03
SMG1-205ENST00000561947 LAMC3Q9Y6N6 1575 aa15.23■□□□□ 0.03
SMG1-205ENST00000561947 NESP48681 1621 aa15.23■□□□□ 0.03
SMG1-205ENST00000561947 DNMBPQ6XZF7 1577 aa15.22■□□□□ 0.03
SMG1-205ENST00000561947 CUX2O14529 1486 aa15.22■□□□□ 0.03
SMG1-205ENST00000561947 VPS8Q8N3P4 1428 aa15.2■□□□□ 0.02
SMG1-205ENST00000561947 TOPBP1Q92547 1522 aa15.17■□□□□ 0.02
SMG1-205ENST00000561947 ZEB1P37275 1124 aaPredicted RBP15.16■□□□□ 0.02
SMG1-205ENST00000561947 IGF1RP08069 1367 aa15.15■□□□□ 0.02
SMG1-205ENST00000561947 TTBK1Q5TCY1 1321 aaPredicted RBP15.13■□□□□ 0.01
SMG1-205ENST00000561947 POLA1P09884 1462 aaPredicted RBP15.12■□□□□ 0.01
SMG1-205ENST00000561947 ABCA10Q8WWZ4 1543 aa15.11■□□□□ 0.01
SMG1-205ENST00000561947 ARAP1Q96P48 1450 aa15.11■□□□□ 0.01
SMG1-205ENST00000561947 RANGAP1P46060 587 aaPredicted RBP15.1■□□□□ 0.01
SMG1-205ENST00000561947 URB2Q14146 1524 aaKnown RBP15.09■□□□□ 0.01
SMG1-205ENST00000561947 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
SMG1-205ENST00000561947 RAD54L2Q9Y4B4 1467 aa15.09■□□□□ 0.01
SMG1-205ENST00000561947 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
SMG1-205ENST00000561947 CARMIL1Q5VZK9 1371 aa15.08■□□□□ 0
SMG1-205ENST00000561947 KIF21AQ7Z4S6 1674 aa15.07■□□□□ 0
SMG1-205ENST00000561947 WDR97A6NE52 1622 aa15.06■□□□□ 0
SMG1-205ENST00000561947 APLP2Q06481 763 aa15.04■□□□□ -0
SMG1-205ENST00000561947 ARHGAP35Q9NRY4 1499 aa15.03■□□□□ -0
SMG1-205ENST00000561947 CUL7Q14999 1698 aa15.02■□□□□ -0
SMG1-205ENST00000561947 ABCA5Q8WWZ7 1642 aa14.98□□□□□ -0.01
SMG1-205ENST00000561947 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.97□□□□□ -0.01
SMG1-205ENST00000561947 CCER1Q8TC90 406 aaPredicted RBP14.94□□□□□ -0.02
SMG1-205ENST00000561947 CTTNBP2Q8WZ74 1663 aa14.93□□□□□ -0.02
SMG1-205ENST00000561947 TARBP1Q13395 1621 aaKnown RBP14.92□□□□□ -0.02
SMG1-205ENST00000561947 GAPVD1Q14C86 1478 aa14.91□□□□□ -0.02
SMG1-205ENST00000561947 TDRD9Q8NDG6 1382 aaKnown RBP14.89□□□□□ -0.03
SMG1-205ENST00000561947 MRC2Q9UBG0 1479 aa14.89□□□□□ -0.03
SMG1-205ENST00000561947 EFCAB5A4FU69 1503 aa14.87□□□□□ -0.03
SMG1-205ENST00000561947 KANK4Q5T7N3 995 aaPredicted RBP14.87□□□□□ -0.03
SMG1-205ENST00000561947 MAP3K1Q13233 1512 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms