RNA–Protein interactions for RNA: ENST00000561864.1

AC055717.2-201, humanhuman

TSL 4 BASIC

Gene AC055717.2, Length 577 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC055717.2-201ENST00000561864 NISCHQ9Y2I1 1504 aa28■■■□□ 2.07
AC055717.2-201ENST00000561864 CCDC180Q9P1Z9 1646 aa24.37■■□□□ 1.49
AC055717.2-201ENST00000561864 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
AC055717.2-201ENST00000561864 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
AC055717.2-201ENST00000561864 SHROOM4Q9ULL8 1493 aa22.92■■□□□ 1.26
AC055717.2-201ENST00000561864 ABCC9O60706 1549 aa22.92■■□□□ 1.26
AC055717.2-201ENST00000561864 MYO15BQ96JP2 1530 aa22.83■■□□□ 1.25
AC055717.2-201ENST00000561864 DCAF8L2P0C7V8 631 aa22.8■■□□□ 1.24
AC055717.2-201ENST00000561864 NACADO15069 1562 aa22.57■■□□□ 1.2
AC055717.2-201ENST00000561864 SCRIBQ14160 1630 aa22.35■■□□□ 1.17
AC055717.2-201ENST00000561864 RB1CC1Q8TDY2 1594 aa22.29■■□□□ 1.16
AC055717.2-201ENST00000561864 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
AC055717.2-201ENST00000561864 UNC13AQ9UPW8 1703 aa21.83■■□□□ 1.09
AC055717.2-201ENST00000561864 RSF1Q96T23 1441 aaPredicted RBP21.81■■□□□ 1.08
AC055717.2-201ENST00000561864 CECR2Q9BXF3 1484 aa21.66■■□□□ 1.06
AC055717.2-201ENST00000561864 BAZ1AQ9NRL2 1556 aaPredicted RBP21.63■■□□□ 1.05
AC055717.2-201ENST00000561864 MROH2BQ7Z745 1585 aa21.61■■□□□ 1.05
AC055717.2-201ENST00000561864 BICRAQ9NZM4 1560 aa21.57■■□□□ 1.04
AC055717.2-201ENST00000561864 PABPN1Q86U42 306 aaKnown RBP eCLIP21.52■■□□□ 1.04
AC055717.2-201ENST00000561864 SMARCA4P51532 1647 aa21.48■■□□□ 1.03
AC055717.2-201ENST00000561864 CHIC1Q5VXU3 224 aa21.48■■□□□ 1.03
AC055717.2-201ENST00000561864 WIZO95785 1651 aa21.47■■□□□ 1.03
AC055717.2-201ENST00000561864 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
AC055717.2-201ENST00000561864 PEG3Q9GZU2 1588 aa21.24■□□□□ 0.99
AC055717.2-201ENST00000561864 EIF4G1Q04637 1599 aaKnown RBP21.12■□□□□ 0.97
AC055717.2-201ENST00000561864 SMARCA2P51531 1590 aa21.1■□□□□ 0.97
AC055717.2-201ENST00000561864 CCDC88BA6NC98 1476 aa21.02■□□□□ 0.96
AC055717.2-201ENST00000561864 ATAD2BQ9ULI0 1458 aa21.01■□□□□ 0.95
AC055717.2-201ENST00000561864 DNAJC5BQ9UF47 199 aa20.92■□□□□ 0.94
AC055717.2-201ENST00000561864 BAZ1BQ9UIG0 1483 aaKnown RBP20.92■□□□□ 0.94
AC055717.2-201ENST00000561864 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
AC055717.2-201ENST00000561864 HMGXB3Q12766 1538 aa20.84■□□□□ 0.93
AC055717.2-201ENST00000561864 NCAPD3P42695 1498 aa20.78■□□□□ 0.92
AC055717.2-201ENST00000561864 CC2D2AQ9P2K1 1620 aa20.68■□□□□ 0.9
AC055717.2-201ENST00000561864 ABCC8Q09428 1581 aa20.68■□□□□ 0.9
AC055717.2-201ENST00000561864 LOC105371045A0A1W2PR82 267 aa20.58■□□□□ 0.89
AC055717.2-201ENST00000561864 WRNQ14191 1432 aaPredicted RBP eCLIP20.53■□□□□ 0.88
AC055717.2-201ENST00000561864 EEA1Q15075 1411 aa20.49■□□□□ 0.87
AC055717.2-201ENST00000561864 FAM9AQ8IZU1 332 aaPredicted RBP20.46■□□□□ 0.87
AC055717.2-201ENST00000561864 SYNJ1O43426 1573 aa20.46■□□□□ 0.87
AC055717.2-201ENST00000561864 PRDM2Q13029 1718 aa20.43■□□□□ 0.86
AC055717.2-201ENST00000561864 CFTRP13569 1480 aa20.41■□□□□ 0.86
AC055717.2-201ENST00000561864 BIVM-ERCC5R4GMW8 1640 aa20.38■□□□□ 0.85
AC055717.2-201ENST00000561864 TOP2BQ02880 1626 aa20.38■□□□□ 0.85
AC055717.2-201ENST00000561864 SOGA1O94964 1423 aa20.33■□□□□ 0.84
AC055717.2-201ENST00000561864 CADPSQ9ULU8 1353 aa20.23■□□□□ 0.83
AC055717.2-201ENST00000561864 KIF21BO75037 1637 aa20.22■□□□□ 0.83
AC055717.2-201ENST00000561864 RUSC2Q8N2Y8 1516 aa20.22■□□□□ 0.83
AC055717.2-201ENST00000561864 CSRNP3Q8WYN3 585 aa20.21■□□□□ 0.83
AC055717.2-201ENST00000561864 CUX1P39880 1505 aa20.21■□□□□ 0.83
AC055717.2-201ENST00000561864 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
AC055717.2-201ENST00000561864 CEP164Q9UPV0 1460 aa20.16■□□□□ 0.82
AC055717.2-201ENST00000561864 TNIKQ9UKE5 1360 aa20.15■□□□□ 0.82
AC055717.2-201ENST00000561864 EHMT2Q96KQ7 1210 aa20.09■□□□□ 0.81
AC055717.2-201ENST00000561864 LAMC3Q9Y6N6 1575 aa20.07■□□□□ 0.8
AC055717.2-201ENST00000561864 CEP162Q5TB80 1403 aa20.06■□□□□ 0.8
AC055717.2-201ENST00000561864 FANCD2Q9BXW9 1451 aa20.04■□□□□ 0.8
AC055717.2-201ENST00000561864 TRIM26Q12899 539 aaPredicted RBP20.02■□□□□ 0.8
AC055717.2-201ENST00000561864 ERICH3Q5RHP9 1530 aa20.02■□□□□ 0.79
AC055717.2-201ENST00000561864 PCGF6Q9BYE7 350 aa20.01■□□□□ 0.79
AC055717.2-201ENST00000561864 KIF27Q86VH2 1401 aa20■□□□□ 0.79
AC055717.2-201ENST00000561864 DNMBPQ6XZF7 1577 aa19.98■□□□□ 0.79
AC055717.2-201ENST00000561864 PRXQ9BXM0 1461 aa19.95■□□□□ 0.78
AC055717.2-201ENST00000561864 UBTFP17480 764 aaKnown RBP19.94■□□□□ 0.78
AC055717.2-201ENST00000561864 FGD5Q6ZNL6 1462 aa19.93■□□□□ 0.78
AC055717.2-201ENST00000561864 RAPGEF2Q9Y4G8 1499 aa19.93■□□□□ 0.78
AC055717.2-201ENST00000561864 NESP48681 1621 aa19.91■□□□□ 0.78
AC055717.2-201ENST00000561864 TOPBP1Q92547 1522 aa19.86■□□□□ 0.77
AC055717.2-201ENST00000561864 CUX2O14529 1486 aa19.85■□□□□ 0.77
AC055717.2-201ENST00000561864 PDS5BQ9NTI5 1447 aa19.85■□□□□ 0.77
AC055717.2-201ENST00000561864 CLIP1P30622 1438 aa19.84■□□□□ 0.77
AC055717.2-201ENST00000561864 HRCP23327 699 aa19.79■□□□□ 0.76
AC055717.2-201ENST00000561864 ABCA10Q8WWZ4 1543 aa19.79■□□□□ 0.76
AC055717.2-201ENST00000561864 POLA1P09884 1462 aaPredicted RBP19.79■□□□□ 0.76
AC055717.2-201ENST00000561864 URB2Q14146 1524 aaKnown RBP19.77■□□□□ 0.76
AC055717.2-201ENST00000561864 KIF21AQ7Z4S6 1674 aa19.76■□□□□ 0.75
AC055717.2-201ENST00000561864 WDR97A6NE52 1622 aa19.76■□□□□ 0.75
AC055717.2-201ENST00000561864 VPS8Q8N3P4 1428 aa19.74■□□□□ 0.75
AC055717.2-201ENST00000561864 IGF1RP08069 1367 aa19.72■□□□□ 0.75
AC055717.2-201ENST00000561864 ERCC6Q03468 1493 aa19.72■□□□□ 0.75
AC055717.2-201ENST00000561864 CUL7Q14999 1698 aa19.68■□□□□ 0.74
AC055717.2-201ENST00000561864 RAD54L2Q9Y4B4 1467 aa19.67■□□□□ 0.74
AC055717.2-201ENST00000561864 CARMIL1Q5VZK9 1371 aa19.65■□□□□ 0.74
AC055717.2-201ENST00000561864 ABCA5Q8WWZ7 1642 aa19.63■□□□□ 0.73
AC055717.2-201ENST00000561864 ARAP1Q96P48 1450 aa19.62■□□□□ 0.73
AC055717.2-201ENST00000561864 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
AC055717.2-201ENST00000561864 TARBP1Q13395 1621 aaKnown RBP19.57■□□□□ 0.72
AC055717.2-201ENST00000561864 PPARGC1BQ86YN6 1023 aaKnown RBP19.56■□□□□ 0.72
AC055717.2-201ENST00000561864 ARHGAP35Q9NRY4 1499 aa19.54■□□□□ 0.72
AC055717.2-201ENST00000561864 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
AC055717.2-201ENST00000561864 CTTNBP2Q8WZ74 1663 aa19.51■□□□□ 0.71
AC055717.2-201ENST00000561864 WDR62O43379 1518 aa19.51■□□□□ 0.71
AC055717.2-201ENST00000561864 APLP2Q06481 763 aa19.47■□□□□ 0.71
AC055717.2-201ENST00000561864 EFCAB5A4FU69 1503 aa19.46■□□□□ 0.71
AC055717.2-201ENST00000561864 THOC2Q8NI27 1593 aaKnown RBP19.46■□□□□ 0.71
AC055717.2-201ENST00000561864 ZEB1P37275 1124 aaPredicted RBP19.45■□□□□ 0.7
AC055717.2-201ENST00000561864 PBRM1Q86U86 1689 aa19.45■□□□□ 0.7
AC055717.2-201ENST00000561864 RANGAP1P46060 587 aaPredicted RBP19.44■□□□□ 0.7
AC055717.2-201ENST00000561864 TDRD9Q8NDG6 1382 aaKnown RBP19.43■□□□□ 0.7
AC055717.2-201ENST00000561864 IFT140Q96RY7 1462 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms