RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 NISCHQ9Y2I1 1504 aa24.15■■□□□ 1.46
SPG11-217ENST00000559511 CCDC180Q9P1Z9 1646 aa20.96■□□□□ 0.95
SPG11-217ENST00000559511 ZCCHC6Q5VYS8 1495 aaKnown RBP20.33■□□□□ 0.85
SPG11-217ENST00000559511 SHROOM4Q9ULL8 1493 aa19.97■□□□□ 0.79
SPG11-217ENST00000559511 DCAF1Q9Y4B6 1507 aa19.93■□□□□ 0.78
SPG11-217ENST00000559511 DCAF8L2P0C7V8 631 aa19.88■□□□□ 0.77
SPG11-217ENST00000559511 ABCC9O60706 1549 aa19.61■□□□□ 0.73
SPG11-217ENST00000559511 MYO15BQ96JP2 1530 aa19.58■□□□□ 0.72
SPG11-217ENST00000559511 NACADO15069 1562 aa19.42■□□□□ 0.7
SPG11-217ENST00000559511 SUPT5HO00267 1087 aaKnown RBP19.42■□□□□ 0.7
SPG11-217ENST00000559511 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
SPG11-217ENST00000559511 RB1CC1Q8TDY2 1594 aa19.21■□□□□ 0.67
SPG11-217ENST00000559511 UNC13AQ9UPW8 1703 aa18.99■□□□□ 0.63
SPG11-217ENST00000559511 RSF1Q96T23 1441 aaPredicted RBP18.83■□□□□ 0.6
SPG11-217ENST00000559511 CHIC1Q5VXU3 224 aa18.81■□□□□ 0.6
SPG11-217ENST00000559511 CECR2Q9BXF3 1484 aa18.79■□□□□ 0.6
SPG11-217ENST00000559511 MROH2BQ7Z745 1585 aa18.7■□□□□ 0.58
SPG11-217ENST00000559511 BICRAQ9NZM4 1560 aa18.69■□□□□ 0.58
SPG11-217ENST00000559511 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
SPG11-217ENST00000559511 WIZO95785 1651 aa18.61■□□□□ 0.57
SPG11-217ENST00000559511 SMARCA4P51532 1647 aa18.54■□□□□ 0.56
SPG11-217ENST00000559511 PABPN1Q86U42 306 aaKnown RBP eCLIP18.53■□□□□ 0.56
SPG11-217ENST00000559511 TOP2AP11388 1531 aaKnown RBP18.35■□□□□ 0.53
SPG11-217ENST00000559511 PEG3Q9GZU2 1588 aa18.27■□□□□ 0.52
SPG11-217ENST00000559511 SMARCA2P51531 1590 aa18.21■□□□□ 0.51
SPG11-217ENST00000559511 LOC105371045A0A1W2PR82 267 aa18.2■□□□□ 0.5
SPG11-217ENST00000559511 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
SPG11-217ENST00000559511 CCDC88BA6NC98 1476 aa18.17■□□□□ 0.5
SPG11-217ENST00000559511 TRIM41Q8WV44 630 aa18.15■□□□□ 0.5
SPG11-217ENST00000559511 ATAD2BQ9ULI0 1458 aa18.14■□□□□ 0.49
SPG11-217ENST00000559511 BAZ1BQ9UIG0 1483 aaKnown RBP18.04■□□□□ 0.48
SPG11-217ENST00000559511 FAM9AQ8IZU1 332 aaPredicted RBP17.93■□□□□ 0.46
SPG11-217ENST00000559511 HMGXB3Q12766 1538 aa17.93■□□□□ 0.46
SPG11-217ENST00000559511 ABCC8Q09428 1581 aa17.92■□□□□ 0.46
SPG11-217ENST00000559511 NCAPD3P42695 1498 aa17.91■□□□□ 0.46
SPG11-217ENST00000559511 PCGF6Q9BYE7 350 aa17.89■□□□□ 0.45
SPG11-217ENST00000559511 CC2D2AQ9P2K1 1620 aa17.77■□□□□ 0.43
SPG11-217ENST00000559511 EHMT2Q96KQ7 1210 aa17.75■□□□□ 0.43
SPG11-217ENST00000559511 HRCP23327 699 aa17.73■□□□□ 0.43
SPG11-217ENST00000559511 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
SPG11-217ENST00000559511 SYNJ1O43426 1573 aa17.68■□□□□ 0.42
SPG11-217ENST00000559511 TRIM26Q12899 539 aaPredicted RBP17.66■□□□□ 0.42
SPG11-217ENST00000559511 PRDM2Q13029 1718 aa17.64■□□□□ 0.41
SPG11-217ENST00000559511 SOGA1O94964 1423 aa17.6■□□□□ 0.41
SPG11-217ENST00000559511 CFTRP13569 1480 aa17.6■□□□□ 0.41
SPG11-217ENST00000559511 TOP2BQ02880 1626 aa17.56■□□□□ 0.4
SPG11-217ENST00000559511 BIVM-ERCC5R4GMW8 1640 aa17.56■□□□□ 0.4
SPG11-217ENST00000559511 RUSC2Q8N2Y8 1516 aa17.55■□□□□ 0.4
SPG11-217ENST00000559511 EEA1Q15075 1411 aa17.53■□□□□ 0.4
SPG11-217ENST00000559511 CADPSQ9ULU8 1353 aa17.47■□□□□ 0.39
SPG11-217ENST00000559511 CUX1P39880 1505 aa17.46■□□□□ 0.39
SPG11-217ENST00000559511 CSRNP3Q8WYN3 585 aa17.45■□□□□ 0.38
SPG11-217ENST00000559511 CEP162Q5TB80 1403 aa17.4■□□□□ 0.38
SPG11-217ENST00000559511 TNIKQ9UKE5 1360 aa17.39■□□□□ 0.37
SPG11-217ENST00000559511 PPARGC1BQ86YN6 1023 aaKnown RBP17.38■□□□□ 0.37
SPG11-217ENST00000559511 KIF21BO75037 1637 aa17.37■□□□□ 0.37
SPG11-217ENST00000559511 GOLGA3Q08378 1498 aa17.36■□□□□ 0.37
SPG11-217ENST00000559511 NESP48681 1621 aa17.32■□□□□ 0.36
SPG11-217ENST00000559511 CEP164Q9UPV0 1460 aa17.31■□□□□ 0.36
SPG11-217ENST00000559511 UBTFP17480 764 aaKnown RBP17.31■□□□□ 0.36
SPG11-217ENST00000559511 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
SPG11-217ENST00000559511 LAMC3Q9Y6N6 1575 aa17.29■□□□□ 0.36
SPG11-217ENST00000559511 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.35
SPG11-217ENST00000559511 RAPGEF2Q9Y4G8 1499 aa17.22■□□□□ 0.35
SPG11-217ENST00000559511 FGD5Q6ZNL6 1462 aa17.22■□□□□ 0.35
SPG11-217ENST00000559511 KIF27Q86VH2 1401 aa17.21■□□□□ 0.35
SPG11-217ENST00000559511 DNMBPQ6XZF7 1577 aa17.21■□□□□ 0.35
SPG11-217ENST00000559511 PRXQ9BXM0 1461 aa17.18■□□□□ 0.34
SPG11-217ENST00000559511 ERICH3Q5RHP9 1530 aa17.18■□□□□ 0.34
SPG11-217ENST00000559511 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
SPG11-217ENST00000559511 KIF21AQ7Z4S6 1674 aa17.16■□□□□ 0.34
SPG11-217ENST00000559511 CUX2O14529 1486 aa17.14■□□□□ 0.33
SPG11-217ENST00000559511 ZEB1P37275 1124 aaPredicted RBP17.14■□□□□ 0.33
SPG11-217ENST00000559511 CLIP1P30622 1438 aa17.13■□□□□ 0.33
SPG11-217ENST00000559511 TTBK1Q5TCY1 1321 aaPredicted RBP17.11■□□□□ 0.33
SPG11-217ENST00000559511 PDS5BQ9NTI5 1447 aa17.1■□□□□ 0.33
SPG11-217ENST00000559511 URB2Q14146 1524 aaKnown RBP17.1■□□□□ 0.33
SPG11-217ENST00000559511 POLA1P09884 1462 aaPredicted RBP17.09■□□□□ 0.33
SPG11-217ENST00000559511 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
SPG11-217ENST00000559511 IGF1RP08069 1367 aa17.05■□□□□ 0.32
SPG11-217ENST00000559511 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
SPG11-217ENST00000559511 ABCA10Q8WWZ4 1543 aa17.05■□□□□ 0.32
SPG11-217ENST00000559511 VPS8Q8N3P4 1428 aa17.03■□□□□ 0.32
SPG11-217ENST00000559511 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
SPG11-217ENST00000559511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.98■□□□□ 0.31
SPG11-217ENST00000559511 CARMIL1Q5VZK9 1371 aa16.96■□□□□ 0.31
SPG11-217ENST00000559511 ABCA5Q8WWZ7 1642 aa16.93■□□□□ 0.3
SPG11-217ENST00000559511 CUL7Q14999 1698 aa16.93■□□□□ 0.3
SPG11-217ENST00000559511 ARAP1Q96P48 1450 aa16.93■□□□□ 0.3
SPG11-217ENST00000559511 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
SPG11-217ENST00000559511 MRC2Q9UBG0 1479 aa16.9■□□□□ 0.3
SPG11-217ENST00000559511 CCER1Q8TC90 406 aaPredicted RBP16.9■□□□□ 0.3
SPG11-217ENST00000559511 ARHGAP35Q9NRY4 1499 aa16.86■□□□□ 0.29
SPG11-217ENST00000559511 TDRD9Q8NDG6 1382 aaKnown RBP16.85■□□□□ 0.29
SPG11-217ENST00000559511 APLP2Q06481 763 aa16.85■□□□□ 0.29
SPG11-217ENST00000559511 GAPVD1Q14C86 1478 aa16.85■□□□□ 0.29
SPG11-217ENST00000559511 CTTNBP2Q8WZ74 1663 aa16.84■□□□□ 0.29
SPG11-217ENST00000559511 WDR62O43379 1518 aa16.82■□□□□ 0.28
SPG11-217ENST00000559511 PBRM1Q86U86 1689 aa16.82■□□□□ 0.28
SPG11-217ENST00000559511 THOC2Q8NI27 1593 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms